X-RAY DIFFRACTION Experimental Data & Validation


X-ray Experimental Help

Crystallization

Crystalization Experiments
Method Vapor Diffusion Sitting Drop
pH 3
Temperature 293.0
Details 50 mM Na citrate, 100 mM NaCl, pH 3.0, VAPOR DIFFUSION, SITTING DROP, temperature 293K

Crystal Data

Unit Cell
Length (Å) Angle (°)
a = 44.48 α = 90
b = 48.94 β = 90
c = 75.5 γ = 90
Symmetry
Space Group P 21 21 21

Diffraction

Diffraction Experiment
ID # Data Collection Temperature
1 100
Diffraction Detector
Detector Diffraction Type Details Collection Date
CCD MARRESEARCH -- 2001-02-10
Diffraction Radiation
Monochromator Protocol
-- SINGLE WAVELENGTH
Diffraction Detector Source
Source Type Wavelength List Synchrotron Site Beamline
SYNCHROTRON ESRF BEAMLINE ID14-4 0.9393 ESRF ID14-4

Data Collection

Overall
Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot
1.46 48.94 96.9 0.049 0.049 -- 4.1 28302 28302 0.0 0.0 --
High Resolution Shell
Resolution (High) Resolution (Low) Percent Possible (All) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All)
1.46 1.54 84.5 0.049 0.049 1.5 2.8 2929

Refinement

Statistics
Structure Solution Method Refinement High Resolution Refinement Low Resolution Cut-off Sigma (I) Cut-off Sigma (F) Number of Reflections (All) Number of Reflections (Observed) Number of Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work R-Free R-Free Selection Details
MOLECULAR REPLACEMENT 1.461 48.945 -- 0.0 28154 28154 1409 91.6 -- 0.1489 0.1412 0.2287 RANDOM
Temperature Factor Modeling
Temperature Factor Value
Isotropic Thermal Model anisotropic
RMS Deviations
Key Refinement Restraint Deviation
s_zero_chiral_vol 0.063
s_non_zero_chiral_vol 0.078
s_similar_dist 0.0
s_angle_d 0.03
s_from_restr_planes 0.0307
s_anti_bump_dis_restr 0.034
s_rigid_bond_adp_cmpnt 0.003
s_bond_d 0.01
s_similar_adp_cmpnt 0.061
s_approx_iso_adps 0.076
Coordinate Error
Parameter Value
Number Disordered Residues 0.0
Occupancy Sum Hydrogen 0.0
Occupancy Sum Non Hydrogen 1699.0
Number of Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms Numbers
Protein Atoms 1418
Nucleic Acid Atoms 0
Heterogen Atoms 21
Solvent Atoms 253

Software

Software
Software Name Purpose
MOSFLM data reduction
SCALA data scaling
SHELX model building
SHELXL-97 refinement
CCP4 data scaling version: (SCALA)
SHELX phasing