X-RAY DIFFRACTION Experimental Data & Validation


X-ray Experimental Help

Crystallization

Crystalization Experiments
Method Vapor Diffusion Sitting Drop
pH 5.6
Temperature 293.0
Details PEG 4000, Ammonium acetate, sodium citrate, pH 5.6, VAPOR DIFFUSION, SITTING DROP, temperature 293K

Crystal Data

Unit Cell
Length (Å) Angle (°)
a = 89.02 α = 90
b = 89.02 β = 90
c = 38.27 γ = 90
Symmetry
Space Group I 4

Diffraction

Diffraction Experiment
ID # Data Collection Temperature
1 100
Diffraction Detector
Detector Diffraction Type Details Collection Date
CCD ADSC QUANTUM 4 -- 2001-09-15
Diffraction Radiation
Monochromator Protocol
-- SINGLE WAVELENGTH
Diffraction Detector Source
Source Type Wavelength List Synchrotron Site Beamline
SYNCHROTRON ESRF BEAMLINE ID14-4 0.9393 ESRF ID14-4

Data Collection

Overall
Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot
1.38 40 72.3 0.046 0.046 -- 3.0 22343 22343 0.0 0.0 --
High Resolution Shell
Resolution (High) Resolution (Low) Percent Possible (All) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All)
1.38 1.46 13.2 0.234 0.234 2.9 1.2 581

Refinement

Statistics
Structure Solution Method Refinement High Resolution Refinement Low Resolution Cut-off Sigma (I) Cut-off Sigma (F) Number of Reflections (All) Number of Reflections (Observed) Number of Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work R-Free R-Free Selection Details
MOLECULAR REPLACEMENT 1.38 20.989 -- 0.0 22198 22198 1103 71.0 0.1654 0.1654 0.1588 0.2326 RANDOM
Temperature Factor Modeling
Temperature Factor Value
Isotropic Thermal Model anisotropic
RMS Deviations
Key Refinement Restraint Deviation
s_approx_iso_adps 0.062
s_similar_adp_cmpnt 0.049
s_rigid_bond_adp_cmpnt 0.003
s_anti_bump_dis_restr 0.01
s_non_zero_chiral_vol 0.049
s_zero_chiral_vol 0.04
s_from_restr_planes 0.0261
s_similar_dist 0.0
s_angle_d 0.025
s_bond_d 0.009
Coordinate Error
Parameter Value
Number Disordered Residues 1.0
Occupancy Sum Hydrogen 4.0
Occupancy Sum Non Hydrogen 1319.21
Number of Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms Numbers
Protein Atoms 1103
Nucleic Acid Atoms 0
Heterogen Atoms 21
Solvent Atoms 194

Software

Computing
Computing Package Purpose
MOSFLM Data Reduction (intensity integration)
CCP4 (SCALA) Data Reduction (data scaling)
AMORE Structure Solution
SHELXL-97 Structure Refinement
Software
Software Name Purpose
SHELXL-97 refinement
AMoRE model building