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Biological Macromolecular Structures Enabling Breakthroughs in Research and Education
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Structure Summary
3D View
Experiment
1KP7
Conserved RNA Structure within the HCV IRES eIF3 Binding Site
Display Files
FASTA Sequence
PDB File
PDB File (Header)
mmCIF File
mmCIF File (Header)
PDBML/XML File
PDBML/XML File (Header)
Download Files
FASTA Sequence
PDB File (Text)
PDB File (gz)
PDBx/mmCIF File
PDBx/mmCIF File (gz)
PDBML/XML File
PDBML/XML File (gz)
SOLUTION NMR Experimental Data
Experimental Details
Sample Conditions
Sample Contents
1.4 mM RNA, 10mM sodium phosphate buffer, 0.1mM EDTA
Solvent
D2O or 90% H2O, 10% D2O
Ionic Strength
10 mM sodium phosphate
pH
6
Pressure
ambient
Temperature (K)
298
Experiment(s):
2D NOESY, DQF-COSY, TOCSY, H-P HETCOR
Sample Contents
0.9 mM U-15N,13C RNA, 10mM sodium phosphate buffer, 0.1mM EDTA
Solvent
D2O or 90% H2O, 10% D2O
Ionic Strength
10 mM sodium phosphate
pH
6
Pressure
ambient
Temperature (K)
298
Experiment(s):
3D C-edited NOESY, HCCH COSY, HCP, C-edited H-P HETCOR, C-edited TOCSY
Spectrometer Information
Manufacturer
Model
Field Strength
Bruker
DRX
500.0
Bruker
Avance
800.0
Bruker
DMX
600.0
NMR Refinement
Method
simulated annealing
NMR Ensemble Information
Conformer Selection Criteria
energy-minimized average of 26 converged conformers with low energy and low restraint violations
Conformers Calculated Total Number
26
Conformers Submitted Total Number
1
Computation: NMR Software
#
Classification
Software Name
Author
1
structure solution version: 3.851
X-PLOR
Brunger, A.T.
2
refinement version: 3.851
X-PLOR
Brunger, A.T.