X-RAY DIFFRACTION Experimental Data & Validation


X-ray Experimental Help

Crystallization

Crystalization Experiments
Method Evaporation
pH 6.5
Temperature 298.0
Details alcohol, pH 6.5, EVAPORATION, temperature 298.0K

Crystal Data

Unit Cell
Length (Å) Angle (°)
a = 138.13 α = 90
b = 138.13 β = 90
c = 199.34 γ = 120
Symmetry
Space Group H 3

Diffraction

Diffraction Experiment
ID # Data Collection Temperature
1 113
Diffraction Radiation
Monochromator Protocol
-- SINGLE WAVELENGTH
Diffraction Detector Source
Source Type Wavelength List Synchrotron Site Beamline
ROTATING ANODE RIGAKU -- -- --

Data Collection

Overall
Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot
2.5 100 -- 0.065 -- -- 1.69 -- 47621 0.0 2.0 35.0
High Resolution Shell
Resolution (High) Resolution (Low) Percent Possible (All) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All)
2.5 2.57 98.8 0.35 -- 2.0 -- 4058

Refinement

Statistics
Structure Solution Method Refinement High Resolution Refinement Low Resolution Cut-off Sigma (I) Cut-off Sigma (F) Number of Reflections (All) Number of Reflections (Observed) Number of Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work R-Free R-Free Selection Details
MOLECULAR REPLACEMENT 2.5 38.0 0.0 0.0 45958 45958 2297 93.8 -- -- 0.239 0.274 4.7
Temperature Factor Modeling
Temperature Factor Value
Anisotropic B[1][1] -2.45
Anisotropic B[1][2] 3.7
Anisotropic B[1][3] 0.0
Anisotropic B[2][2] -2.45
Anisotropic B[2][3] 0.0
Anisotropic B[3][3] 4.91
RMS Deviations
Key Refinement Restraint Deviation
c_angle_d 1.397
c_bond_d 0.00751
Number of Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms Numbers
Protein Atoms 6186
Nucleic Acid Atoms 0
Heterogen Atoms 0
Solvent Atoms 586

Software

Computing
Computing Package Purpose
DENZO Data Reduction (intensity integration)
CCP4 (SCALA) Data Reduction (data scaling)
CNS Structure Solution
CNS Structure Refinement
Software
Software Name Purpose
CNS refinement
CNS model building
SCALA data reduction
DENZO data collection