X-RAY DIFFRACTION Experimental Data & Validation


X-ray Experimental Help

Crystallization

Crystalization Experiments
Method Evaporation
pH 6.5
Temperature 298.0
Details alcohol, pH 6.5, EVAPORATION, temperature 298.0K

Crystal Data

Unit Cell
Length (Å) Angle (°)
a = 138.13 α = 90
b = 138.13 β = 90
c = 199.34 γ = 120
Symmetry
Space Group H 3

Diffraction

Diffraction Experiment
ID # Data Collection Temperature
1 113
Diffraction Radiation
Monochromator Protocol
-- SINGLE WAVELENGTH
Diffraction Detector Source
Source Type Wavelength List Synchrotron Site Beamline
ROTATING ANODE RIGAKU -- -- --

Data Collection

Overall
Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot
2.5 100 -- 0.065 -- -- 1.69 -- 47621 0.0 2.0 35.0
High Resolution Shell
Resolution (High) Resolution (Low) Percent Possible (All) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All)
2.5 2.57 98.8 0.35 -- 2.0 -- 4058

Refinement

Statistics
Structure Solution Method Refinement High Resolution Refinement Low Resolution Cut-off Sigma (I) Cut-off Sigma (F) Number of Reflections (All) Number of Reflections (Observed) Number of Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work R-Free R-Free Selection Details
MOLECULAR REPLACEMENT 2.5 38.0 0.0 0.0 45958 45958 2297 93.8 -- -- 0.239 0.274 4.7
Temperature Factor Modeling
Temperature Factor Value
Anisotropic B[1][1] -2.45
Anisotropic B[1][2] 3.7
Anisotropic B[1][3] 0.0
Anisotropic B[2][2] -2.45
Anisotropic B[2][3] 0.0
Anisotropic B[3][3] 4.91
RMS Deviations
Key Refinement Restraint Deviation
c_bond_d 0.00751
c_angle_d 1.397
Number of Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms Numbers
Protein Atoms 6186
Nucleic Acid Atoms 0
Heterogen Atoms 0
Solvent Atoms 586

Software

Software
Software Name Purpose
DENZO data reduction
SCALA data scaling
CNS refinement
CCP4 data scaling version: (SCALA)
CNS phasing