X-RAY DIFFRACTION Experimental Data & Validation


X-ray Experimental Help

Crystallization

Crystalization Experiments
Method Vapor Diffusion Hanging Drop
pH 8
Temperature 288.0
Details Lithium sulfate, HEPES, Sodium chloride, Magnesium sulfate, pH 8.0, VAPOR DIFFUSION, HANGING DROP, temperature 288K

Crystal Data

Unit Cell
Length (Å) Angle (°)
a = 83.03 α = 90
b = 50.06 β = 122.6
c = 69.88 γ = 90
Symmetry
Space Group C 1 2 1

Diffraction

Diffraction Experiment
ID # Data Collection Temperature
1 100
Diffraction Detector
Detector Diffraction Type Details Collection Date
CCD ADSC QUANTUM 4 -- 2000-04-13
Diffraction Radiation
Monochromator Protocol
-- SINGLE WAVELENGTH
Diffraction Detector Source
Source Type Wavelength List Synchrotron Site Beamline
SYNCHROTRON NSLS BEAMLINE X26C 1.100 NSLS X26C

Data Collection

Overall
Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot
1.6 20 96.7 -- 0.047 -- 4.5 30985 30985 -- 0.0 9.8
High Resolution Shell
Resolution (High) Resolution (Low) Percent Possible (All) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All)
1.6 1.63 70.9 -- 0.229 -- 3.0 1143

Refinement

Statistics
Structure Solution Method Refinement High Resolution Refinement Low Resolution Cut-off Sigma (I) Cut-off Sigma (F) Number of Reflections (All) Number of Reflections (Observed) Number of Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work R-Free R-Free Selection Details
difference fourier 1.6 20.0 -- 0.0 30985 30985 1548 96.7 -- -- 0.149 0.197 RANDOM
Temperature Factor Modeling
Temperature Factor Value
Mean Isotropic B 13.1
RMS Deviations
Key Refinement Restraint Deviation
s_approx_iso_adps 0.0
s_similar_adp_cmpnt 0.057
s_rigid_bond_adp_cmpnt 0.004
s_anti_bump_dis_restr 0.016
s_non_zero_chiral_vol 0.052
s_zero_chiral_vol 0.041
s_from_restr_planes 0.0219
s_similar_dist 0.0
s_angle_d 0.024
s_bond_d 0.01
Coordinate Error
Parameter Value
Luzzati ESD (Observed) 0.14
Number Disordered Residues 8.0
Occupancy Sum Hydrogen 0.0
Occupancy Sum Non Hydrogen 2119.0
Number of Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms Numbers
Protein Atoms 1748
Nucleic Acid Atoms 0
Heterogen Atoms 25
Solvent Atoms 333

Software

Computing
Computing Package Purpose
DENZO Data Reduction (intensity integration)
SCALEPACK Data Reduction (data scaling)
CNS Structure Solution
SHELXL-97 Structure Refinement
Software
Software Name Purpose
SHELXL-97 refinement
CNS model building
SCALEPACK data reduction
DENZO data collection