X-RAY DIFFRACTION Experimental Data & Validation


X-ray Experimental Help

Crystallization

Crystalization Experiments
Method Liquid Diffusion
pH 7.1
Temperature 298.0
Details 2-propanol, pH 7.1, LIQUID DIFFUSION, temperature 298.0K

Crystal Data

Unit Cell
Length (Å) Angle (°)
a = 30.44 α = 90
b = 38.38 β = 105.74
c = 53.32 γ = 90
Symmetry
Space Group P 1 21 1

Diffraction

Diffraction Experiment
ID # Data Collection Temperature
1 298
Diffraction Detector
Detector Diffraction Type Details Collection Date
AREA DETECTOR MARRESEARCH -- --
Diffraction Radiation
Monochromator Protocol
-- SINGLE WAVELENGTH
Diffraction Detector Source
Source Type Wavelength List Synchrotron Site Beamline
SYNCHROTRON EMBL/DESY, HAMBURG BEAMLINE X11 -- EMBL/DESY, HAMBURG X11

Data Collection

Overall
Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot
1.15 30 99.9 0.043 -- -- 4.4 42236 42236 -- 0.0 12.8
High Resolution Shell
Resolution (High) Resolution (Low) Percent Possible (All) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All)
1.15 1.17 98.0 0.307 -- 3.7 -- --

Refinement

Statistics
Structure Solution Method Refinement High Resolution Refinement Low Resolution Cut-off Sigma (I) Cut-off Sigma (F) Number of Reflections (All) Number of Reflections (Observed) Number of Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work R-Free R-Free Selection Details
MOLECULAR REPLACEMENT 1.15 30.0 -- 0.0 42225 42225 -- 99.9 0.106 0.106 -- -- --
High Resolution Shell
Refinement method Shell Resolution (High) Shell Resolution (Low) # of Reflections (Observed) # of Reflections (R-Free) # of Reflections (R-Work) R-Factor (R-Work) R-Factor (R-Free) R-Factor (R-Free Error) Percent Reflections (Observed)
X Ray Diffraction 1.15 1.19 4431 -- -- 0.148 -- -- --
RMS Deviations
Key Refinement Restraint Deviation
s_zero_chiral_vol 0.14
s_angle_d 0.033
s_bond_d 0.015
Coordinate Error
Parameter Value
Number Disordered Residues 25.0
Occupancy Sum Hydrogen 892.25
Occupancy Sum Non Hydrogen 1139.69
Number of Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms Numbers
Protein Atoms 951
Nucleic Acid Atoms 0
Heterogen Atoms 0
Solvent Atoms 229

Software

Computing
Computing Package Purpose
DENZO Data Reduction (intensity integration)
SCALEPACK Data Reduction (data scaling)
AMORE Structure Solution
SHELXL-96 Structure Refinement
Software
Software Name Purpose
SHELXL-96 refinement
AMoRE model building
SCALEPACK data reduction
DENZO data collection