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An Information Portal to 105097 Biological Macromolecular Structures

X-RAY DIFFRACTION
Materials and Methods page
1JZ0
  •   Crystallization Hide
    Crystallization Experiments
    Method VAPOR DIFFUSION, HANGING DROP
    pH 5.9
    Temperature 295.0
    Details Cacodylate, PEG 8000, MgSO4, NaCl, BME, pH 5.9, VAPOR DIFFUSION, HANGING DROP at 295K, pH 5.90
     
  •   Crystal Data Hide
    Unit Cell
    Length    (Å) Angle    (°)
    a = 107.5 α = 90
    b = 207.2 β = 95
    c = 510.2 γ = 90
     
    Space Group
    Space Group Name:    P 1 21 1
     
     
  •   Diffraction Hide
    Diffraction Experiment
    Diffrn ID 1
    Data Collection Temperature 288
     
    Diffraction Detector
    Detector IMAGE PLATE
    Type RIGAKU
    Collection Date 1994-10-21
     
    Diffraction Radiation
    Diffraction Protocol SINGLE WAVELENGTH
     
    Diffraction Source
    Source SYNCHROTRON
    Type PHOTON FACTORY BEAMLINE BL-6A
    Wavelength List 1.000
    Site PHOTON FACTORY
    Beamline BL-6A
     
     
  •   Refinement Data Hide
    Reflection Details
    Resolution(High) 2.6
    Resolution(Low) 68.5
    Number Reflections(All) 523624
    Number Reflections(Observed) 523624
    Percent Possible(Observed) 70.0
    R Merge I(Observed) 0.071
    B(Isotropic) From Wilson Plot 29.2
    Redundancy 1.9
     
    High Resolution Shell Details
    Resolution(High) 2.6
    Resolution(Low) 2.67
    R Merge I(Observed) 0.36
    Mean I Over Sigma(Observed) 2.0
    Redundancy 1.4
     
     
  •   Refinement Hide
    Refinement Statistics
    Structure Solution Method MOLECULAR REPLACEMENT
    reflnsShellList 2.6
    Resolution(Low) 68.5
    Cut-off Sigma(F) 0.0
    Number of Reflections(all) 523624
    Number of Reflections(Observed) 523624
    Percent Reflections(Observed) 70.0
    R-Factor(All) 0.23
    R-Factor(Observed) 0.23
    R-Free Selection Details RANDOM
     
    Temperature Factor Modeling
    Isotropic Thermal Model ISOTROPIC
    Mean Isotropic B Value 45.3
    Anisotropic B[1][1] -7.8
    Anisotropic B[1][2] 0.0
    Anisotropic B[1][3] -187.3
    Anisotropic B[2][2] 6.2
    Anisotropic B[2][3] 0.0
    Anisotropic B[3][3] 1.6
     
    RMS Deviations
    Parameter Type Deviation from Ideal
    t_nbd 0.045
    t_it 5.3
    t_gen_planes 0.015
    t_trig_c_planes 0.011
    t_dihedral_angle_d 19.6
    t_angle_deg 2.618
    t_bond_d 0.017
     
    Number of Non-Hydrogen Atoms Used in Refinement
    Protein Atoms 65752
    Nucleic Acid Atoms 0
    Heterogen Atoms 120
    Solvent Atoms 1120
     
     
  •   Software and Computing Hide
    Computing
    Data Reduction (intensity integration) WEIS
    Data Reduction (data scaling) CCP4
    Structure Solution TNT
    Structure Refinement TNT V. 5-E
     
    Software
    refinement TNT version: 5E
    model building TNT