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X-RAY DIFFRACTION
Materials and Methods page
1JYZ
  •   Crystallization Hide
    Crystallization Experiments
    Method VAPOR DIFFUSION, HANGING DROP
    pH 5.9
    Temperature 295.0
    Details Cacodylate, PEG 8000, MgSO4, NaCl, BME, pH 5.9, VAPOR DIFFUSION, HANGING DROP at 295K, pH 5.90
     
  •   Crystal Data Hide
    Unit Cell
    Length    (Å) Angle    (°)
    a = 107.6 α = 90
    b = 207.3 β = 95
    c = 510.3 γ = 90
     
    Space Group
    Space Group Name:    P 1 21 1
     
     
  •   Diffraction Hide
    Diffraction Experiment
    Diffrn ID 1
    Data Collection Temperature 288
     
    Diffraction Detector
    Detector IMAGE PLATE
    Type RIGAKU
    Collection Date 1994-10-22
     
    Diffraction Radiation
    Diffraction Protocol SINGLE WAVELENGTH
     
    Diffraction Source
    Source SYNCHROTRON
    Type PHOTON FACTORY BEAMLINE BL-6A
    Wavelength List 1.000
    Site PHOTON FACTORY
    Beamline BL-6A
     
     
  •   Refinement Data Hide
    Reflection Details
    Resolution(High) 2.7
    Resolution(Low) 20
    Number Reflections(All) 409961
    Number Reflections(Observed) 409961
    Percent Possible(Observed) 66.0
    R Merge I(Observed) 0.09
    B(Isotropic) From Wilson Plot 25.3
    Redundancy 1.8
     
    High Resolution Shell Details
    Resolution(High) 2.7
    Resolution(Low) 2.74
    Percent Possible(All) 37.9
    R Merge I(Observed) 0.41
    Mean I Over Sigma(Observed) 1.7
    Redundancy 1.5
    Number Unique Reflections(All) 18525
     
     
  •   Refinement Hide
    Refinement Statistics
    Structure Solution Method MOLECULAR REPLACEMENT
    reflnsShellList 2.7
    Resolution(Low) 20.0
    Cut-off Sigma(F) 0.0
    Number of Reflections(all) 409961
    Number of Reflections(Observed) 409961
    Percent Reflections(Observed) 66.0
    R-Factor(All) 0.234
    R-Factor(Observed) 0.234
    R-Work 0.234
    R-Free Selection Details RANDOM
     
    Temperature Factor Modeling
    Isotropic Thermal Model ISOTROPIC
    Mean Isotropic B Value 40.4
    Anisotropic B[1][1] -6.9
    Anisotropic B[1][2] 0.0
    Anisotropic B[1][3] -174.6
    Anisotropic B[2][2] 7.2
    Anisotropic B[2][3] 0.0
    Anisotropic B[3][3] -0.3
     
    RMS Deviations
    Parameter Type Deviation from Ideal
    t_nbd 0.038
    t_it 2.4
    t_gen_planes 0.013
    t_trig_c_planes 0.008
    t_dihedral_angle_d 19.7
    t_angle_deg 2.36
    t_bond_d 0.015
     
    Number of Non-Hydrogen Atoms Used in Refinement
    Protein Atoms 65680
    Nucleic Acid Atoms 0
    Heterogen Atoms 216
    Solvent Atoms 1296
     
     
  •   Software and Computing Hide
    Computing
    Data Reduction (intensity integration) WEIS
    Data Reduction (data scaling) CCP4
    Structure Solution TNT
    Structure Refinement TNT V. 5-E
     
    Software
    refinement TNT version: 5E
    model building TNT
    data reduction CCP4
    data collection WEIS