POP-OUT | CLOSE
 
X-RAY DIFFRACTION
Materials and Methods page
1JYX
  •   Crystallization Hide
    Crystallization Experiments
    Method VAPOR DIFFUSION, HANGING DROP
    pH 6.5
    Temperature 288.0
    Details Bis-Tris, PEG 8000, MgCl2, NaCl, DTT, pH 6.5, VAPOR DIFFUSION, HANGING DROP at 288K, pH 6.50
     
  •   Crystal Data Hide
    Unit Cell
    Length    (Å) Angle    (°)
    a = 151.77 α = 90
    b = 161.19 β = 90
    c = 202.91 γ = 90
     
    Space Group
    Space Group Name:    P 21 21 21
     
     
  •   Diffraction Hide
    Diffraction Experiment
    Diffrn ID 1
    Data Collection Temperature 100
     
    Diffraction Detector
    Detector CCD
    Type ADSC QUANTUM 4
    Collection Date 1998-03-15
     
    Diffraction Radiation
    Diffraction Protocol SINGLE WAVELENGTH
     
    Diffraction Source
    Source SYNCHROTRON
    Type ALS BEAMLINE 5.0.1
    Wavelength 1.000
    Wavelength List 1.00
    Site ALS
    Beamline 5.0.1
     
     
  •   Refinement Data Hide
    Reflection Details
    Resolution(High) 1.75
    Resolution(Low) 17
    Number Reflections(All) 444288
    Number Reflections(Observed) 444288
    Percent Possible(Observed) 89.6
    R Merge I(Observed) 0.07
    B(Isotropic) From Wilson Plot 17.2
    Redundancy 3.8
     
    High Resolution Shell Details
    Resolution(High) 1.75
    Percent Possible(All) 88.0
    R Merge I(Observed) 0.41
    Mean I Over Sigma(Observed) 2.0
     
     
  •   Refinement Hide
    Refinement Statistics
    Structure Solution Method MOLECULAR REPLACEMENT
    reflnsShellList 1.75
    Resolution(Low) 27.0
    Cut-off Sigma(F) 0.0
    Number of Reflections(all) 444288
    Number of Reflections(Observed) 444288
    Number of Reflections(R-Free) 6397
    Percent Reflections(Observed) 89.6
    R-Work 0.168
    R-Free 0.244
    R-Free Selection Details RANDOM
     
    Temperature Factor Modeling
    Isotropic Thermal Model ISOTROPIC
    Mean Isotropic B Value 26.1
    Anisotropic B[1][1] -2.1
    Anisotropic B[1][2] 0.0
    Anisotropic B[1][3] 0.0
    Anisotropic B[2][2] 2.5
    Anisotropic B[2][3] 0.0
    Anisotropic B[3][3] -0.4
     
    RMS Deviations
    Parameter Type Deviation from Ideal
    t_nbd 0.07
    t_it 5.4
    t_gen_planes 0.017
    t_trig_c_planes 0.016
    t_pseud_angle 17.0
    t_dihedral_angle_d 17.6
    t_angle_deg 2.771
    t_bond_d 0.015
     
    Number of Non-Hydrogen Atoms Used in Refinement
    Protein Atoms 32500
    Nucleic Acid Atoms 0
    Heterogen Atoms 409
    Solvent Atoms 3607
     
     
  •   Software and Computing Hide
    Computing
    Data Reduction (intensity integration) MOSFLM
    Data Reduction (data scaling) CCP4 (SCALA)
    Structure Solution TNT
    Structure Refinement TNT V. 5-E
     
    Software
    refinement TNT version: 5E
    model building TNT