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X-RAY DIFFRACTION
Materials and Methods page
1JYN
  •   Crystallization Hide
    Crystallization Experiments
    Method VAPOR DIFFUSION, HANGING DROP
    pH 6.5
    Temperature 288.0
    Details PEG 8000, NaCl, MgCl2, DTT, Bis-Tris, pH 6.5, VAPOR DIFFUSION, HANGING DROP at 288K, pH 6.50
     
  •   Crystal Data Hide
    Unit Cell
    Length    (Å) Angle    (°)
    a = 149.55 α = 90
    b = 168.63 β = 90
    c = 200.88 γ = 90
     
    Space Group
    Space Group Name:    P 21 21 21
     
     
  •   Diffraction Hide
    Diffraction Experiment
    Diffrn ID 1
    Data Collection Temperature 95
     
    Diffraction Detector
    Detector IMAGE PLATE
    Type MARRESEARCH
    Collection Date 1999-01-23
     
    Diffraction Radiation
    Diffraction Protocol SINGLE WAVELENGTH
     
    Diffraction Source
    Source SYNCHROTRON
    Type SSRL BEAMLINE BL9-1
    Wavelength 0.98
    Site SSRL
    Beamline BL9-1
     
     
  •   Refinement Data Hide
    Reflection Details
    Resolution(High) 1.8
    Resolution(Low) 17
    Number Reflections(All) 433670
    Number Reflections(Observed) 433670
    Percent Possible(Observed) 92.0
    R Merge I(Observed) 0.066
    B(Isotropic) From Wilson Plot 11.2
    Redundancy 2.6
     
    High Resolution Shell Details
    Resolution(High) 1.8
    Percent Possible(All) 81.9
    R Merge I(Observed) 0.19
    Mean I Over Sigma(Observed) 4.1
     
     
  •   Refinement Hide
    Refinement Statistics
    Structure Solution Method MOLECULAR REPLACEMENT
    reflnsShellList 1.8
    Resolution(Low) 17.0
    Number of Reflections(all) 433670
    Number of Reflections(Observed) 433670
    Number of Reflections(R-Free) 6261
    Percent Reflections(Observed) 92.0
    R-Work 0.155
    R-Free 0.219
    R-Free Selection Details RANDOM
     
    Temperature Factor Modeling
    Isotropic Thermal Model NONE USED
    Anisotropic B[1][1] -0.9
    Anisotropic B[1][2] 0.0
    Anisotropic B[1][3] 0.0
    Anisotropic B[2][2] 2.0
    Anisotropic B[2][3] 0.0
    Anisotropic B[3][3] -1.1
     
    RMS Deviations
    Parameter Type Deviation from Ideal
    t_nbd 0.09
    t_it 8.026
    t_gen_planes 0.019
    t_trig_c_planes 0.019
    t_pseud_angle 14.965
    t_dihedral_angle_d 17.339
    t_angle_deg 2.938
    t_bond_d 0.018
     
    Number of Non-Hydrogen Atoms Used in Refinement
    Protein Atoms 32500
    Nucleic Acid Atoms 0
    Heterogen Atoms 505
    Solvent Atoms 4529
     
     
  •   Software and Computing Hide
    Computing
    Data Reduction (intensity integration) MOSFLM
    Data Reduction (data scaling) CCP4 (SCALA)
    Structure Solution TNT
    Structure Refinement TNT V. 5-E
     
    Software
    refinement TNT version: 5E
    model building TNT