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X-RAY DIFFRACTION
Materials and Methods page
1JY7
  •   Crystallization Hide
    Crystallization Experiments
    Method LIQUID DIFFUSION
    pH 6.7
    Temperature 293.0
    Details PEG 4000, Sodium potassium phosphate, pH 6.7, LIQUID DIFFUSION at 293K
     
  •   Crystal Data Hide
    Unit Cell
    Length    (Å) Angle    (°)
    a = 231.5 α = 90
    b = 57.9 β = 101.2
    c = 143.4 γ = 90
     
    Space Group
    Space Group Name:    C 1 2 1
     
     
  •   Diffraction Hide
    Diffraction Experiment
    Diffrn ID 1
    Data Collection Temperature 293
     
    Diffraction Detector
    Detector IMAGE PLATE
    Type RIGAKU
     
    Diffraction Radiation
    Diffraction Protocol SINGLE WAVELENGTH
     
    Diffraction Source
    Source ROTATING ANODE
    Type RIGAKU RU200
    Wavelength List 1.5418
     
     
  •   Refinement Data Hide
    Reflection Details
    Observed Criterion Sigma (F) 0.0
    Observed Criterion Sigma(I) 0.0
    Resolution(High) 3.2
    Resolution(Low) 10
    Number Reflections(Observed) 84268
    Percent Possible(Observed) 92.7
    R Merge I(Observed) 0.108
    B(Isotropic) From Wilson Plot 38.0
     
    High Resolution Shell Details
    Resolution(High) 3.2
    Resolution(Low) 3.3
    R Merge I(Observed) 0.379
     
     
  •   Refinement Hide
    Refinement Statistics
    Structure Solution Method MOLECULAR REPLACEMENT
    reflnsShellList 3.2
    Resolution(Low) 10.0
    Cut-off Sigma(F) 2.0
    Number of Reflections(Observed) 21043
    Number of Reflections(R-Free) 1010
    Percent Reflections(Observed) 69.7
    R-Factor(Observed) 0.204
    R-Work 0.204
    R-Free 0.245
    R-Free Selection Details RANDOM
     
    Temperature Factor Modeling
    Isotropic Thermal Model RESTRAINED
    Mean Isotropic B Value 85.0
    Anisotropic B[1][1] -20.45
    Anisotropic B[1][2] 0.0
    Anisotropic B[1][3] 19.51
    Anisotropic B[2][2] 7.36
    Anisotropic B[2][3] 0.0
    Anisotropic B[3][3] 13.09
     
    Resolution Shells
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 3.2
    Shell Resolution(Low) 3.39
    Number of Reflections(R-Free) 78
    Number of Reflections(R-Work) 1459
    R-Factor(R-Work) 0.364
    R-Factor(R-Free) 0.376
    R-Free Error 0.043
    Percent Reflections(Observed) 30.8
     
    RMS Deviations
    Parameter Type Deviation from Ideal
    c_improper_angle_d 1.13
    c_dihedral_angle_d 18.8
    c_angle_deg 1.3
    c_bond_d 0.014
     
    Coordinate Error
    Luzzati ESD(Observed) 0.44
    Luzzati Sigma A(Observed) 0.84
    Luzzati Resolution Cutoff(Low) 5.0
    Luzzati ESD(R-Free Set) 0.49
    Luzzati Sigma A(R-Free Set) 0.67
     
    Number of Non-Hydrogen Atoms Used in Refinement
    Protein Atoms 13152
    Nucleic Acid Atoms 0
    Heterogen Atoms 516
    Solvent Atoms 0
     
     
  •   Software and Computing Hide
    Computing
    Data Reduction (intensity integration) DENZO
    Data Reduction (data scaling) SCALEPACK
    Structure Solution AMORE
    Structure Refinement CNS
     
    Software
    refinement CNS
    model building AMoRE
    data reduction SCALEPACK
    data collection DENZO