SOLUTION NMR Experimental Data


Experimental Details
Sample Conditions
Sample Contentshedamycin covalently bound to G4 of d(ACCGGT)
SolventpH6.7 10%D2O/90%D2O buffer , 10mM phosphate, 50 mM NaCl
Ionic Strength0.05
pH6.7
Pressureambient
Temperature (K)288
Experiment(s):2D NOESY
Sample Contentshedamycin covalently bound to G4 of d(ACCGGT)
SolventpH6.7 100%D2O buffer , 10mM phosphate, 50 mM NaCl
Ionic Strength0.05
pH6.7
Pressureambient
Temperature (K)288
Experiment(s):DQF-COSY
Spectrometer Information
Manufacturer Model Field Strength
Varian INOVA 600.0
NMR Refinement
Method Full relaxation matrix refinement Restrained Molecular Dynamics Torsion Angle dynamics
NMR Ensemble Information
Conformer Selection Criteria The 10 structures submitted are those with the lowest energy,and agree best with the NMR data.
Conformers Calculated Total Number 100
Conformers Submitted Total Number 10
Representative Model Choice Rationale
1 n/a
Additional NMR Experimental Information
1 The data was collected and processed using standard 2D homonuclear techniques
Computation: NMR Software
# Classification Software Name Author
1 iterative matrix relaxation version: 3.2 MARDIGRAS Borgais, B. and James, T.L.
2 refinement version: 23.2 CHARMM MOLECULAR SIMULATIONS INCORPORATED, Waltham MA
3 refinement version: 1.0 CNS_Solve Brunger,A.T., Adams,P.D., Clore,G.M., DeLano,W.L., Gros,P. Grosse-Kunstleve,R.W., Jiang,T-S., Kuszewski,J., Nilges,M., Pannu,N.S., Read,R.J., Rice,L.M., Simonson,T., Warren,G.L.
4 refinement version: 5.2 CORMA Keepers,J. and James, T. L.
5 collection version: 6.1 VNMR Varian Associates
6 data analysis version: 1.3.10 XEASY Bartels,C, Xia, T-H, Billeter, M., Guntert,P & Wuthrich,