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139555
Biological Macromolecular Structures Enabling Breakthroughs in Research and Education
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Structure Summary
3D View
Annotations
Sequence
Sequence Similarity
Structure Similarity
Experiment
1I0C
EPS8 SH3 CLOSED MONOMER
Display Files
FASTA Sequence
PDB File
PDB File (Header)
mmCIF File
mmCIF File (Header)
PDBML/XML File
PDBML/XML File (Header)
Download Files
FASTA Sequence
PDB File (Text)
PDB File (gz)
PDBx/mmCIF File
PDBx/mmCIF File (gz)
PDBML/XML File
PDBML/XML File (gz)
Structure Factor (Text)
Structure Factor (gz)
Biological Assembly 1 (gz) (A)
Biological Assembly 2 (gz) (A)
X-RAY DIFFRACTION Experimental Data & Validation
X-ray Experimental Help
Crystallization
Crystalization Experiments
pH
4
Details
pH 4.0
Crystal Data
Unit Cell
Length (Å)
Angle (°)
a = 49.74
α = 90
b = 49.74
β = 90
c = 36.46
γ = 120
Symmetry
Space Group
P 31
Diffraction
Diffraction Radiation
Monochromator
Protocol
--
SINGLE WAVELENGTH
Diffraction Detector Source
Source
Type
Wavelength List
Synchrotron Site
Beamline
Data Collection
Overall
Resolution (High)
Resolution (Low)
Percent Possible (Observed)
R Merge I (Observed)
R Sym I (Observed)
Net I Over Average Sigma (I)
Redundancy
Number Reflections (All)
Number Reflections (Observed)
Observed Criterion Sigma (F)
Observed Criterion Sigma (I)
B (Isotropic) From Wilson Plot
2
21.54
100.0
0.069
--
--
3.6
6799
6795
0.0
0.0
13.1
Refinement
Statistics
Structure Solution Method
Refinement High Resolution
Refinement Low Resolution
Cut-off Sigma (I)
Cut-off Sigma (F)
Number of Reflections (All)
Number of Reflections (Observed)
Number of Reflections (R-Free)
Percent Reflections (Observed)
R-Factor (All)
R-Factor (Observed)
R-Work
R-Free
R-Free Selection Details
MOLECULAR REPLACEMENT
2.0
22.0
--
0.0
6799
6548
713
96.3
--
--
0.189
0.235
random
High Resolution Shell
Refinement method
Shell Resolution (High)
Shell Resolution (Low)
# of Reflections (Observed)
# of Reflections (R-Free)
# of Reflections (R-Work)
R-Factor (R-Work)
R-Factor (R-Free)
R-Factor (R-Free Error)
Percent Reflections (Observed)
X Ray Diffraction
2.0
2.09
766
87
679
0.235
0.232
0.025
91.5
X Ray Diffraction
2.09
2.2
822
87
735
0.203
0.2
0.021
94.8
X Ray Diffraction
2.2
2.34
753
79
674
0.234
0.238
0.027
90.9
X Ray Diffraction
2.34
2.52
847
94
753
0.203
0.203
0.021
97.9
X Ray Diffraction
2.52
2.77
838
92
746
0.21
0.211
0.022
97.8
X Ray Diffraction
2.77
3.17
825
90
735
0.205
0.206
0.022
98.7
X Ray Diffraction
3.17
3.99
848
98
750
0.16
0.165
0.017
99.1
X Ray Diffraction
3.99
21.54
849
86
763
0.165
0.164
0.018
99.5
Temperature Factor Modeling
Temperature Factor
Value
Mean Isotropic B
25.6
Anisotropic B[1][1]
2.53
Anisotropic B[1][2]
3.17
Anisotropic B[1][3]
0.0
Anisotropic B[2][2]
2.53
Anisotropic B[2][3]
0.0
Anisotropic B[3][3]
-5.06
RMS Deviations
Key
Refinement Restraint Deviation
x_angle_deg
1.9
x_bond_d
0.016
x_dihedral_angle_d
26.1
x_improper_angle_d
1.01
Coordinate Error
Parameter
Value
Luzzati ESD (Observed)
0.21
Luzzati Sigma A (Observed)
0.17
Luzzati Resolution Cutoff (Low)
5.0
Luzzati ESD (R-Free Set)
0.27
Luzzati Sigma A (R-Free Set)
0.21
Number of Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms
Numbers
Protein Atoms
963
Nucleic Acid Atoms
0
Heterogen Atoms
0
Solvent Atoms
92
Software
Software
Software Name
Purpose
CNS
refinement version: 0.5
SCALEPACK
data scaling
AMoRE
phasing