SOLUTION NMR Experimental Data


NMR Refinement
Method simulated annealing
Details NUMBER OF ATOMS USED IN REFINEMENT. NUMBER OF PROTEIN ATOMS 644 NUMBER OF NUCLEIC ACID ATOMS 322 NUMBER OF HETEROGEN ATOMS 0 NUMBER OF SOLVENT ATOMS 0 THE STRUCTURES WERE CALCULATED USING THE SIMULATED ANNEALING PROTOCOL OF NILGES ET AL. (1988) FEBS LETT. 229, 129 - 136 USING THE PROGRAM X-PLOR 3.1 (BRUNGER) MODIFIED TO INCORPORATE COUPLING CONSTANT (GARRETT ET AL. (1984) J. MAGN. RESON. SERIES B 104, 99 - 103) AND CARBON CHEMICAL SHIFT RESTRAINTS (KUSZEWSKI ET AL. (1995) MAGN. RESON. SERIES B 106, 92 - 96). THE 3D STRUCTURE OF THE HUMAN SRY-DNA COMPLEX SOLVED BY MULTI-DIMENSIONAL HETERONUCLEAR-EDITED AND -FILTERED NMR IS BASED ON 1805 EXPERIMENTAL RESTRAINTS: (A) INTRA-PROTEIN: 290 SEQUENTIAL (|I-J|=1), 221 MEDIUM RANGE (1 < |I-J| >=5) AND 107 LONG RANGE (|I-J| >5) INTERRESIDUES. 238 INTRARESIDUE APPROXIMATE INTERPROTON DISTANCE RESTRAINTS; 70 DISTANCE RESTRAINTS FOR 35 HYDROGEN BONDS; 153 TORSION ANGLE (71 PHI, 10 PSI, 56 CHI1 AND 16 CHI2) RESTRAINTS; 56 THREE-BOND HN-HA COUPLING CONSTANT RESTRAINTS; 145 (73 CALPHA AND 72 CBETA) 13C SHIFT RESTRAINTS. (B) INTRA-DNA: 206 INTRARESIDUE, 96 SEQUENTIAL INTRASTRAND, 36 INTERSTRAND INTERPROTON DISTANCE RESTRAINTS; 40 H-BOND RESTRAINTS; 72 TORSION ANGLE RESTRAINTS (FOR ALPHA, BETA, GAMMA, EPSILON AND ZETA BACKBONE TORSION ANGLES. (C) INTERMOLECULAR: 75 INTERPROTON DISTANCE RESTRAINTS THE STRUCTURE IN THIS ENTRY IS THE RESTRAINED REGULARIZED MEAN STRUCTURE. THE LAST COLUMN REPRESENTS THE RMS OF THE 35 INDIVIDUAL SIMULATED ANNEALING STRUCTURES ABOUT THE MEAN COORDINATE POSITIONS. THE 35 INDIVIDUAL STRUCTURES CAN BE FOUND IN PDB ENTRY 1HRZ. THE LAST COLUMN IN THE INDIVIDUAL SA STRUCTURES HAS NO MEANING.
NMR Ensemble Information
Conformers Submitted Total Number 1
Additional NMR Experimental Information
1 THE 3D STRUCTURE OF THE HUMAN SRY-DNA COMPLEX SOLVED BY MULTI-DIMENSIONAL HETERONUCLEAR-EDITED AND -FILTERED NMR IS BASED ON 1805 EXPERIMENTAL RESTRAINTS: (A) INTRA-PROTEIN: 290 SEQUENTIAL (|I-J|=1), 221 MEDIUM RANGE (1 < |I-J| >=5) AND 107 LONG RANGE (|I-J| >5) INTERRESIDUES. 238 INTRARESIDUE APPROXIMATE INTERPROTON DISTANCE RESTRAINTS; 70 DISTANCE RESTRAINTS FOR 35 HYDROGEN BONDS; 153 TORSION ANGLE (71 PHI, 10 PSI, 56 CHI1 AND 16 CHI2) RESTRAINTS; 56 THREE-BOND HN-HA COUPLING CONSTANT RESTRAINTS; 145 (73 CALPHA AND 72 CBETA) 13C SHIFT RESTRAINTS. (B) INTRA-DNA: 206 INTRARESIDUE, 96 SEQUENTIAL INTRASTRAND, 36 INTERSTRAND INTERPROTON DISTANCE RESTRAINTS; 40 H-BOND RESTRAINTS; 72 TORSION ANGLE RESTRAINTS (FOR ALPHA, BETA, GAMMA, EPSILON AND ZETA BACKBONE TORSION ANGLES. (C) INTERMOLECULAR: 75 INTERPROTON DISTANCE RESTRAINTS
Computation: NMR Software
# Classification Software Name Author
1 refinement X-PLOR BRUNGER