X-RAY DIFFRACTION Experimental Data & Validation


X-ray Experimental Help

Crystallization

Crystalization Experiments
pH 8
Details 0.2M NH4CL, 20%PEG2000, 10% ETHYLENE GLYCOL, 0.1 M MES PH 5.6

Crystal Data

Unit Cell
Length (Å) Angle (°)
a = 156.4 α = 90
b = 34.98 β = 112.26
c = 114.81 γ = 90
Symmetry
Space Group C 1 2 1

Diffraction

Diffraction Experiment
ID # Data Collection Temperature
1 100
Diffraction Detector
Detector Diffraction Type Details Collection Date
CCD ADSC MIRRORS 2002-01-15
Diffraction Radiation
Monochromator Protocol
SI 111 SINGLE WAVELENGTH
Diffraction Detector Source
Source Type Wavelength List Synchrotron Site Beamline
SYNCHROTRON SRS BEAMLINE PX14.2 -- SRS PX14.2

Data Collection

Overall
Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot
1.8 50 98.6 0.052 -- -- 3.4 -- 265996 -- -- --
High Resolution Shell
Resolution (High) Resolution (Low) Percent Possible (All) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All)
1.8 1.86 96.3 0.35 -- 2.7 3.0 --

Refinement

Statistics
Structure Solution Method Refinement High Resolution Refinement Low Resolution Cut-off Sigma (I) Cut-off Sigma (F) Number of Reflections (All) Number of Reflections (Observed) Number of Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work R-Free R-Free Selection Details
MOLECULAR REPLACEMENT 1.82 25.0 -- -- -- 47806 2545 96.1 -- 0.234 0.232 0.283 RANDOM
High Resolution Shell
Refinement method Shell Resolution (High) Shell Resolution (Low) # of Reflections (Observed) # of Reflections (R-Free) # of Reflections (R-Work) R-Factor (R-Work) R-Factor (R-Free) R-Factor (R-Free Error) Percent Reflections (Observed)
X Ray Diffraction 1.82 1.87 -- 167 2938 0.369 0.388 -- --
Temperature Factor Modeling
Temperature Factor Value
Mean Isotropic B 27.5
Anisotropic B[1][1] -4.96
Anisotropic B[1][2] 0.0
Anisotropic B[1][3] -2.69
Anisotropic B[2][2] 8.87
Anisotropic B[2][3] 0.0
Anisotropic B[3][3] -5.95
RMS Deviations
Key Refinement Restraint Deviation
r_scangle_it 3.758
r_scbond_it 2.91
r_mcangle_it 1.608
r_mcbond_it 1.198
r_nbd_refined 0.222
r_gen_planes_refined 0.007
r_chiral_restr 0.119
r_dihedral_angle_3_deg 21.915
r_dihedral_angle_1_deg 4.762
r_angle_refined_deg 1.819
r_bond_refined_d 0.016
r_xyhbond_nbd_refined 0.193
r_metal_ion_refined 0.19
r_symmetry_vdw_refined 0.185
r_symmetry_hbond_refined 0.334
Number of Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms Numbers
Protein Atoms 3997
Nucleic Acid Atoms 0
Heterogen Atoms 2
Solvent Atoms 311

Software

Computing
Computing Package Purpose
HKL-2000 Data Reduction (intensity integration)
HKL-2000 Data Reduction (data scaling)
MOLREP Structure Solution
REFMAC 5.0 Structure Refinement
Software
Software Name Purpose
REFMAC version: 5.0 refinement
MOLREP model building