X-RAY DIFFRACTION Experimental Data & Validation


X-ray Experimental Help

Crystallization

Crystalization Experiments
pH 6
Details pH 6.00

Crystal Data

Unit Cell
Length (Å) Angle (°)
a = 106.7 α = 90
b = 106.7 β = 90
c = 106.25 γ = 90
Symmetry
Space Group P 42 21 2

Diffraction

Diffraction Experiment
ID # Data Collection Temperature
1 287
Diffraction Detector
Detector Diffraction Type Details Collection Date
-- -- -- --
Diffraction Radiation
Monochromator Protocol
-- SINGLE WAVELENGTH
Diffraction Detector Source
Source Type Wavelength List Synchrotron Site Beamline
SYNCHROTRON EMBL/DESY, HAMBURG BEAMLINE X31 -- EMBL/DESY, HAMBURG X31

Data Collection

Overall
Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot
1.5 12 97.0 0.06 -- -- 3.7 -- 358628 -- -- --
High Resolution Shell
Resolution (High) Resolution (Low) Percent Possible (All) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All)
1.5 1.54 96.0 0.21 -- 3.6 3.4 --

Refinement

Statistics
Structure Solution Method Refinement High Resolution Refinement Low Resolution Cut-off Sigma (I) Cut-off Sigma (F) Number of Reflections (All) Number of Reflections (Observed) Number of Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work R-Free R-Free Selection Details
MIR 1.5 12.0 -- -- -- 90574 4781 97.5 -- -- 0.092 0.12 RANDOM
High Resolution Shell
Refinement method Shell Resolution (High) Shell Resolution (Low) # of Reflections (Observed) # of Reflections (R-Free) # of Reflections (R-Work) R-Factor (R-Work) R-Factor (R-Free) R-Factor (R-Free Error) Percent Reflections (Observed)
X Ray Diffraction 1.5 1.54 -- 354 6366 0.109 0.153 -- --
RMS Deviations
Key Refinement Restraint Deviation
r_scangle_it 5.332
r_scbond_it 3.596
r_mcangle_it 2.772
r_mcbond_it 1.848
r_nbd_refined 0.254
r_gen_planes_other 0.002
r_gen_planes_refined 0.011
r_chiral_restr 0.108
r_dihedral_angle_3_deg 0.875
r_angle_other_deg 1.702
r_bond_other_d 0.001
r_bond_refined_d 0.013
r_nbd_other 0.189
r_xyhbond_nbd_refined 0.189
r_symmetry_vdw_refined 0.327
r_symmetry_vdw_other 0.178
r_symmetry_hbond_refined 0.157
Number of Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms Numbers
Protein Atoms 3981
Nucleic Acid Atoms 0
Heterogen Atoms 48
Solvent Atoms 538

Software

Computing
Computing Package Purpose
MOSFLM Data Reduction (data scaling)
REFMAC 5.0.36 Structure Refinement
Software
Software Name Purpose
REFMAC version: 5.0.36 refinement