X-RAY DIFFRACTION Experimental Data & Validation


X-ray Experimental Help

Crystallization

Crystalization Experiments
pH 7.6
Details pH 7.60

Crystal Data

Unit Cell
Length (Å) Angle (°)
a = 72.34 α = 90
b = 73.34 β = 90
c = 49.56 γ = 90
Symmetry
Space Group P 41

Diffraction

Diffraction Experiment
ID # Data Collection Temperature
1 100
Diffraction Detector
Detector Diffraction Type Details Collection Date
IMAGE PLATE RIGAKU RAXIS IV MIRRORS --
Diffraction Radiation
Monochromator Protocol
NI FILTER SINGLE WAVELENGTH
Diffraction Detector Source
Source Type Wavelength List Synchrotron Site Beamline
ROTATING ANODE RIGAKU RU200 -- -- --

Data Collection

Overall
Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot
1.9 30 97.9 -- 0.49 -- 9.0 -- 20410 -- -- 27.0

Refinement

Statistics
Structure Solution Method Refinement High Resolution Refinement Low Resolution Cut-off Sigma (I) Cut-off Sigma (F) Number of Reflections (All) Number of Reflections (Observed) Number of Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work R-Free R-Free Selection Details
MOLECULAR REPLACEMENT 1.82 20.0 -- 0.0 -- 22803 1182 98.1 -- -- 0.188 0.234 RANDOM
Temperature Factor Modeling
Temperature Factor Value
Mean Isotropic B 34.2
RMS Deviations
Key Refinement Restraint Deviation
p_scangle_it 2.825
p_singtor_nbd 0.182
p_bond_d 0.01
p_transverse_tor 29.09
p_angle_d 0.029
p_mcangle_it 2.266
p_multtor_nbd 0.219
p_chiral_restr 0.126
p_planar_d 0.03
p_xyhbond_nbd 0.133
p_planar_tor 3.109
p_xhyhbond_nbd 0.255
p_scbond_it 1.777
p_mcbond_it 1.72
p_plane_restr 0.029
p_staggered_tor 14.021
Number of Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms Numbers
Protein Atoms 2063
Nucleic Acid Atoms 0
Heterogen Atoms 10
Solvent Atoms 227

Software

Software
Software Name Purpose
REFMAC refinement
DENZO data reduction
SCALEPACK data scaling
AMoRE phasing