X-RAY DIFFRACTION Experimental Data & Validation


X-ray Experimental Help

Crystallization

Crystalization Experiments
pH 7.6
Details pH 7.60

Crystal Data

Unit Cell
Length (Å) Angle (°)
a = 72.23 α = 90
b = 73.23 β = 90
c = 49.79 γ = 90
Symmetry
Space Group P 41

Diffraction

Diffraction Experiment
ID # Data Collection Temperature
1 100
Diffraction Detector
Detector Diffraction Type Details Collection Date
RAXIS-IV MSC MIRRORS --
Diffraction Radiation
Monochromator Protocol
NI FILTER SINGLE WAVELENGTH
Diffraction Detector Source
Source Type Wavelength List Synchrotron Site Beamline
ROTATING ANODE RIGAKU RU200 -- -- --

Data Collection

Overall
Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot
1.9 30 97.9 -- 0.49 -- 9.0 -- 20410 -- -- 22.0

Refinement

Statistics
Structure Solution Method Refinement High Resolution Refinement Low Resolution Cut-off Sigma (I) Cut-off Sigma (F) Number of Reflections (All) Number of Reflections (Observed) Number of Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work R-Free R-Free Selection Details
MOLECULAR REPLACEMENT 1.9 20.0 -- 0.0 -- 18899 1018 97.9 -- -- 0.17 0.225 RANDOM
Temperature Factor Modeling
Temperature Factor Value
Mean Isotropic B 34.2
RMS Deviations
Key Refinement Restraint Deviation
p_transverse_tor 30.045
p_staggered_tor 11.759
p_planar_tor 3.287
p_xyhbond_nbd 0.126
p_xhyhbond_nbd 0.257
p_multtor_nbd 0.232
p_bond_d 0.011
p_angle_d 0.03
p_planar_d 0.031
p_mcbond_it 1.646
p_mcangle_it 2.573
p_scbond_it 1.747
p_scangle_it 2.799
p_plane_restr 0.036
p_chiral_restr 0.12
p_singtor_nbd 0.179
Number of Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms Numbers
Protein Atoms 2094
Nucleic Acid Atoms 0
Heterogen Atoms 11
Solvent Atoms 312

Software

Computing
Computing Package Purpose
DENZO Data Reduction (intensity integration)
SCALEPACK Data Reduction (data scaling)
AMORE Structure Solution
REFMAC Structure Refinement
Software
Software Name Purpose
REFMAC refinement
AMORE model building