X-RAY DIFFRACTION Experimental Data & Validation


X-ray Experimental Help

Crystallization

Crystalization Experiments
pH 5.5
Details 15-17% (W/V) PEG 4000, 0.1M SODIUM CACODYLATE PH 5.0-5.5, 0.2M LITHIUM SULFATE, PROTEIN 12-15 MG/ML

Crystal Data

Unit Cell
Length (Å) Angle (°)
a = 45.34 α = 90
b = 112.3 β = 90
c = 124.98 γ = 90
Symmetry
Space Group P 21 21 21

Diffraction

Diffraction Experiment
ID # Data Collection Temperature
1 100
Diffraction Detector
Detector Diffraction Type Details Collection Date
CCD ADSC QUANTUM 4 -- 2000-05-13
Diffraction Radiation
Monochromator Protocol
-- SINGLE WAVELENGTH
Diffraction Detector Source
Source Type Wavelength List Synchrotron Site Beamline
SYNCHROTRON ESRF BEAMLINE ID14-2 -- ESRF ID14-2

Data Collection

Overall
Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot
2 30 97.7 0.092 -- -- 6.5 -- 43003 -- 2.5 --
High Resolution Shell
Resolution (High) Resolution (Low) Percent Possible (All) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All)
2.0 2.1 87.8 0.399 -- 1.5 2.2 --

Refinement

Statistics
Structure Solution Method Refinement High Resolution Refinement Low Resolution Cut-off Sigma (I) Cut-off Sigma (F) Number of Reflections (All) Number of Reflections (Observed) Number of Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work R-Free R-Free Selection Details
MOLECULAR REPLACEMENT 2.0 30.0 -- 0.0 -- 40758 2172 97.7 -- -- 0.204 0.257 RANDOM
Temperature Factor Modeling
Temperature Factor Value
Mean Isotropic B 31.3
RMS Deviations
Key Refinement Restraint Deviation
p_scbond_it 3.738
p_chiral_restr 0.183
p_bond_d 0.024
p_mcbond_it 3.054
p_staggered_tor 17.1
p_singtor_nbd 0.183
p_plane_restr 0.028
p_planar_d 0.035
p_mcangle_it 3.981
p_transverse_tor 30.5
p_angle_d 0.025
p_multtor_nbd 0.266
p_scangle_it 5.356
p_planar_tor 4.5
Number of Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms Numbers
Protein Atoms 3870
Nucleic Acid Atoms 0
Heterogen Atoms 72
Solvent Atoms 324

Software

Software
Software Name Purpose
REFMAC refinement
MOSFLM data reduction version: V. 6.0
SCALA data scaling
AMoRE phasing