X-RAY DIFFRACTION Experimental Data & Validation


X-ray Experimental Help

Crystallization

Crystalization Experiments
pH 7.5
Details 1.2M AMMONIUM SULPHATE, 4% PEG400, 0.1M HEPES PH7.5, 11MG/ML PROTEIN WITH 1MM ZN(II), 2.5MM NOG AND 2.5MM PEPTIDE, pH 7.50

Crystal Data

Unit Cell
Length (Å) Angle (°)
a = 86.25 α = 90
b = 86.25 β = 90
c = 148.26 γ = 90
Symmetry
Space Group P 41 21 2

Diffraction

Diffraction Experiment
ID # Data Collection Temperature
1 100
Diffraction Detector
Detector Diffraction Type Details Collection Date
CCD ADSC CCD -- 2002-05-15
Diffraction Radiation
Monochromator Protocol
-- SINGLE WAVELENGTH
Diffraction Detector Source
Source Type Wavelength List Synchrotron Site Beamline
SYNCHROTRON SRS BEAMLINE PX9.6 -- SRS PX9.6

Data Collection

Overall
Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot
2.5 87.71 99.7 0.05 -- -- 6.5 -- 20058 -- -- --
High Resolution Shell
Resolution (High) Resolution (Low) Percent Possible (All) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All)
2.5 2.64 97.9 0.289 -- 2.6 4.4 --

Refinement

Statistics
Structure Solution Method Refinement High Resolution Refinement Low Resolution Cut-off Sigma (I) Cut-off Sigma (F) Number of Reflections (All) Number of Reflections (Observed) Number of Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work R-Free R-Free Selection Details
MOLECULAR REPLACEMENT 2.5 18.0 -- -- -- 18404 1516 99.7 -- 0.194 0.192 0.225 RANDOM
High Resolution Shell
Refinement method Shell Resolution (High) Shell Resolution (Low) # of Reflections (Observed) # of Reflections (R-Free) # of Reflections (R-Work) R-Factor (R-Work) R-Factor (R-Free) R-Factor (R-Free Error) Percent Reflections (Observed)
X Ray Diffraction 2.5 2.56 -- 106 1267 0.227 0.297 -- --
Temperature Factor Modeling
Temperature Factor Value
Mean Isotropic B 35.78
Anisotropic B[1][1] -0.68
Anisotropic B[1][2] 0.0
Anisotropic B[1][3] 0.0
Anisotropic B[2][2] -0.68
Anisotropic B[2][3] 0.0
Anisotropic B[3][3] 1.35
RMS Deviations
Key Refinement Restraint Deviation
r_angle_other_deg 0.832
r_gen_planes_other 0.002
r_metal_ion_refined 0.054
r_symmetry_vdw_refined 0.194
r_mcbond_it 0.761
r_scbond_it 2.22
r_mcangle_it 1.421
r_dihedral_angle_1_deg 4.024
r_symmetry_vdw_other 0.255
r_dihedral_angle_3_deg 18.015
r_nbd_other 0.214
r_xyhbond_nbd_other 0.126
r_angle_refined_deg 1.612
r_nbd_refined 0.232
r_bond_refined_d 0.017
r_symmetry_hbond_other 0.053
r_bond_other_d 0.001
r_symmetry_hbond_refined 0.244
r_scangle_it 3.678
r_chiral_restr 0.097
r_xyhbond_nbd_refined 0.173
r_gen_planes_refined 0.006
Number of Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms Numbers
Protein Atoms 2859
Nucleic Acid Atoms 0
Heterogen Atoms 21
Solvent Atoms 99

Software

Software
Software Name Purpose
REFMAC refinement version: 5.0
MOSFLM data reduction
SCALA data scaling