X-RAY DIFFRACTION Experimental Data & Validation


X-ray Experimental Help

Crystallization

Crystalization Experiments
pH 8.5
Details pH 8.50

Crystal Data

Unit Cell
Length (Å) Angle (°)
a = 58.1 α = 90
b = 58.1 β = 90
c = 155.65 γ = 120
Symmetry
Space Group H 3 2

Diffraction

Diffraction Experiment
ID # Data Collection Temperature
1 100
Diffraction Detector
Detector Diffraction Type Details Collection Date
-- -- -- --
Diffraction Radiation
Monochromator Protocol
-- SINGLE WAVELENGTH
Diffraction Detector Source
Source Type Wavelength List Synchrotron Site Beamline
SYNCHROTRON EMBL/DESY, HAMBURG BEAMLINE BW7B -- EMBL/DESY, HAMBURG BW7B

Data Collection

Overall
Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot
1.3 20 92.9 0.057 -- -- 10.5 -- 28517 -- 2.0 --

Refinement

Statistics
Structure Solution Method Refinement High Resolution Refinement Low Resolution Cut-off Sigma (I) Cut-off Sigma (F) Number of Reflections (All) Number of Reflections (Observed) Number of Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work R-Free R-Free Selection Details
SIRAS 1.27 10.0 -- -- -- 23971 1269 93.3 -- 0.136 0.134 0.168 RANDOM
High Resolution Shell
Refinement method Shell Resolution (High) Shell Resolution (Low) # of Reflections (Observed) # of Reflections (R-Free) # of Reflections (R-Work) R-Factor (R-Work) R-Factor (R-Free) R-Factor (R-Free Error) Percent Reflections (Observed)
X Ray Diffraction 1.27 1.3 -- 88 1805 0.238 0.277 -- --
Temperature Factor Modeling
Temperature Factor Value
Mean Isotropic B 16.94
Anisotropic B[1][1] 1.29
Anisotropic B[1][2] 0.64
Anisotropic B[1][3] 0.0
Anisotropic B[2][2] 1.29
Anisotropic B[2][3] 0.0
Anisotropic B[3][3] -1.93
RMS Deviations
Key Refinement Restraint Deviation
r_scangle_it 9.774
r_scbond_it 8.06
r_mcangle_it 5.649
r_mcbond_it 4.233
r_nbd_refined 0.24
r_gen_planes_other 0.004
r_gen_planes_refined 0.02
r_chiral_restr 0.16
r_dihedral_angle_3_deg 19.729
r_dihedral_angle_1_deg 5.604
r_angle_other_deg 2.514
r_angle_refined_deg 2.048
r_bond_other_d 0.0
r_bond_refined_d 0.02
r_nbd_other 0.239
r_xyhbond_nbd_refined 0.237
r_xyhbond_nbd_other 0.336
r_symmetry_vdw_refined 0.313
r_symmetry_vdw_other 0.322
r_symmetry_hbond_refined 0.38
Number of Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms Numbers
Protein Atoms 713
Nucleic Acid Atoms 0
Heterogen Atoms 14
Solvent Atoms 145

Software

Computing
Computing Package Purpose
DENZO Data Reduction (intensity integration)
SCALEPACK Data Reduction (data scaling)
AUTOSHARP Structure Solution
REFMAC 5.0 Structure Refinement
Software
Software Name Purpose
REFMAC version: 5.0 refinement
AUTOSHARP model building