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X-RAY DIFFRACTION
Materials and Methods page
1GX5
  •   Crystallization Hide
    Crystallization Experiments
    pH 6.8
    Details 4% (W/V) PEG 4000, 0.1 M SODIUM CITRATE, 7% 2-PROPANOL, pH 6.80
     
  •   Crystal Data Hide
    Unit Cell
    Length    (Å) Angle    (°)
    a = 67.08 α = 90
    b = 96.22 β = 90
    c = 96 γ = 90
     
    Space Group
    Space Group Name:    P 21 21 2
     
     
  •   Diffraction Hide
    Diffraction Experiment
    Diffrn ID 1
    Data Collection Temperature 100
     
    Diffraction Detector
    Detector CCD
    Type ADSC
    Collection Date 2000-09-15
     
    Diffraction Radiation
    Diffraction Protocol SINGLE WAVELENGTH
     
    Diffraction Source
    Source SYNCHROTRON
    Type ESRF BEAMLINE ID14-2
    Wavelength .9326
    Site ESRF
    Beamline ID14-2
     
     
  •   Refinement Data Hide
    Reflection Details
    Observed Criterion Sigma(I) -3.0
    Resolution(High) 1.7
    Resolution(Low) 25
    Number Reflections(Observed) 68538
    Percent Possible(Observed) 99.2
    R Merge I(Observed) 0.069
    B(Isotropic) From Wilson Plot 25.7
    Redundancy 3.2
     
    High Resolution Shell Details
    Resolution(High) 1.7
    Resolution(Low) 1.74
    Percent Possible(All) 98.3
    R Merge I(Observed) 0.423
    Mean I Over Sigma(Observed) 2.9
    Redundancy 3.2
     
     
  •   Refinement Hide
    Refinement Statistics
    Structure Solution Method MOLECULAR REPLACEMENT
    reflnsShellList 1.7
    Resolution(Low) 24.78
    Cut-off Sigma(F) 0.0
    Number of Reflections(Observed) 68538
    Number of Reflections(R-Free) 3537
    Percent Reflections(Observed) 99.2
    R-Factor(Observed) 0.193
    R-Work 0.193
    R-Free 0.223
    R-Free Selection Details RANDOM
     
    Temperature Factor Modeling
    Isotropic Thermal Model RESTRAINED
    Mean Isotropic B Value 35.0
    Anisotropic B[1][1] 4.82
    Anisotropic B[1][2] 0.0
    Anisotropic B[1][3] 0.0
    Anisotropic B[2][2] -8.01
    Anisotropic B[2][3] 0.0
    Anisotropic B[3][3] 3.18
     
    Resolution Shells
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 1.7
    Shell Resolution(Low) 1.74
    Number of Reflections(R-Free) 207
    Number of Reflections(R-Work) 4245
    R-Factor(R-Work) 0.285
    R-Factor(R-Free) 0.319
    R-Free Error 0.022
    Percent Reflections(Observed) 98.3
     
    RMS Deviations
    Parameter Type Deviation from Ideal
    c_scangle_it 6.07
    c_scbond_it 4.57
    c_mcangle_it 3.82
    c_mcbond_it 2.9
    c_improper_angle_d 0.95
    c_bond_d 0.01
    c_angle_deg 1.5
    c_dihedral_angle_d 22.1
     
    Coordinate Error
    Luzzati ESD(Observed) 0.19
    Luzzati Sigma A(Observed) 0.17
    Luzzati Resolution Cutoff(Low) 5.0
    Luzzati ESD(R-Free Set) 0.24
    Luzzati Sigma A(R-Free Set) 0.2
     
    Number of Non-Hydrogen Atoms Used in Refinement
    Protein Atoms 4125
    Nucleic Acid Atoms 0
    Heterogen Atoms 48
    Solvent Atoms 652
     
     
  •   Software and Computing Hide
    Computing
    Data Reduction (intensity integration) DENZO
    Data Reduction (data scaling) SCALEPACK
    Structure Solution AMORE
    Structure Refinement CNS 1.1
     
    Software
    refinement CNS version: 1.1
    model building AMORE