X-RAY DIFFRACTION Experimental Data & Validation


X-ray Experimental Help

Crystallization

Crystalization Experiments
pH 7.25
Details pH 7.25

Crystal Data

Unit Cell
Length (Å) Angle (°)
a = 49.04 α = 90
b = 85.41 β = 90
c = 127.67 γ = 90
Symmetry
Space Group I 2 2 2

Diffraction

Diffraction Experiment
ID # Data Collection Temperature
1 110
Diffraction Detector
Detector Diffraction Type Details Collection Date
-- MARRESEARCH -- --
Diffraction Radiation
Monochromator Protocol
-- SINGLE WAVELENGTH
Diffraction Detector Source
Source Type Wavelength List Synchrotron Site Beamline
SYNCHROTRON MAX II BEAMLINE I711 -- MAX II I711

Data Collection

Overall
Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot
1.46 25 95.6 0.041 -- -- 4.5 -- 44706 -- -- --

Refinement

Statistics
Structure Solution Method Refinement High Resolution Refinement Low Resolution Cut-off Sigma (I) Cut-off Sigma (F) Number of Reflections (All) Number of Reflections (Observed) Number of Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work R-Free R-Free Selection Details
MIR 1.46 23.64 -- -- -- 42377 2195 100.0 -- 0.192 0.191 0.212 RANDOM
High Resolution Shell
Refinement method Shell Resolution (High) Shell Resolution (Low) # of Reflections (Observed) # of Reflections (R-Free) # of Reflections (R-Work) R-Factor (R-Work) R-Factor (R-Free) R-Factor (R-Free Error) Percent Reflections (Observed)
X Ray Diffraction 1.46 1.5 -- 147 2870 0.199 0.222 -- --
RMS Deviations
Key Refinement Restraint Deviation
r_scangle_it 3.086
r_scbond_it 1.89
r_mcangle_it 1.518
r_mcbond_it 0.804
r_nbd_refined 0.239
r_gen_planes_other 0.001
r_gen_planes_refined 0.007
r_chiral_restr 0.091
r_dihedral_angle_3_deg 0.676
r_angle_other_deg 1.494
r_bond_other_d 0.001
r_bond_refined_d 0.01
r_nbd_other 0.214
r_xyhbond_nbd_refined 0.21
r_xyhbond_nbd_other 0.102
r_symmetry_vdw_refined 0.942
r_symmetry_vdw_other 0.459
r_symmetry_hbond_refined 0.128
Number of Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms Numbers
Protein Atoms 1740
Nucleic Acid Atoms 0
Heterogen Atoms 10
Solvent Atoms 191

Software

Computing
Computing Package Purpose
DENZO Data Reduction (intensity integration)
SCALEPACK Data Reduction (data scaling)
REFMAC 5.0 Structure Refinement
Software
Software Name Purpose
REFMAC version: 5.0 refinement