X-RAY DIFFRACTION Experimental Data & Validation


X-ray Experimental Help

Crystallization

Crystalization Experiments
pH 8
Details 30MG/ML, 15% PEG3350, 250MM MGCL2, 5MM TRIS PH8.0, 20% ETHYLENE GLYCOL, 50MM GLUCURONIC ACID, 50MM XYLOTRIOSE, pH 8.00

Crystal Data

Unit Cell
Length (Å) Angle (°)
a = 69.26 α = 115.15
b = 74.32 β = 92.94
c = 87.27 γ = 109.24
Symmetry
Space Group P 1

Diffraction

Diffraction Experiment
ID # Data Collection Temperature
1 110
Diffraction Detector
Detector Diffraction Type Details Collection Date
IMAGE PLATE MARRESEARCH OSMICS CONFOCAL MULTILAYER 2001-08-15
Diffraction Radiation
Monochromator Protocol
-- SINGLE WAVELENGTH
Diffraction Detector Source
Source Type Wavelength List Synchrotron Site Beamline
ROTATING ANODE RIGAKU H3RHB -- -- --

Data Collection

Overall
Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot
1.67 20 93.9 0.049 -- -- 2.7 -- 159491 -- -- --
High Resolution Shell
Resolution (High) Resolution (Low) Percent Possible (All) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All)
1.67 1.7 86.4 0.225 -- 3.0 2.5 --

Refinement

Statistics
Structure Solution Method Refinement High Resolution Refinement Low Resolution Cut-off Sigma (I) Cut-off Sigma (F) Number of Reflections (All) Number of Reflections (Observed) Number of Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work R-Free R-Free Selection Details
OTHER 1.67 20.0 -- -- -- 156986 1256 94.1 -- 0.146 0.146 0.172 RANDOM
High Resolution Shell
Refinement method Shell Resolution (High) Shell Resolution (Low) # of Reflections (Observed) # of Reflections (R-Free) # of Reflections (R-Work) R-Factor (R-Work) R-Factor (R-Free) R-Factor (R-Free Error) Percent Reflections (Observed)
X Ray Diffraction 1.67 1.71 -- 97 11041 0.247 0.268 -- --
Temperature Factor Modeling
Temperature Factor Value
Mean Isotropic B 14.57
Anisotropic B[1][1] 0.84
Anisotropic B[1][2] -0.05
Anisotropic B[1][3] -0.27
Anisotropic B[2][2] -0.69
Anisotropic B[2][3] -0.48
Anisotropic B[3][3] -0.61
RMS Deviations
Key Refinement Restraint Deviation
r_scangle_it 3.657
r_scbond_it 2.339
r_mcangle_it 1.44
r_mcbond_it 0.813
r_nbd_refined 0.211
r_gen_planes_other 0.004
r_gen_planes_refined 0.009
r_chiral_restr 0.122
r_dihedral_angle_3_deg 16.145
r_dihedral_angle_1_deg 5.738
r_angle_other_deg 1.971
r_angle_refined_deg 1.724
r_bond_other_d 0.004
r_bond_refined_d 0.016
r_nbd_other 0.158
r_nbtor_other 0.094
r_xyhbond_nbd_refined 0.106
r_symmetry_vdw_refined 0.148
r_symmetry_vdw_other 0.187
r_symmetry_hbond_refined 0.123
Number of Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms Numbers
Protein Atoms 11262
Nucleic Acid Atoms 0
Heterogen Atoms 100
Solvent Atoms 1422

Software

Computing
Computing Package Purpose
DENZO Data Reduction (intensity integration)
SCALEPACK Data Reduction (data scaling)
REFMAC 5.0 Structure Refinement
Software
Software Name Purpose
REFMAC version: 5.0 refinement