X-RAY DIFFRACTION Experimental Data & Validation


X-ray Experimental Help

Crystallization

Crystalization Experiments
pH 8
Details 30MG/ML, 15% PEG3350, 250MM MGCL2, 5MM TRIS PH8.0, 20% ETHYLENE GLYCOL 100MM GLUCURONIC ACID, pH 8.00

Crystal Data

Unit Cell
Length (Å) Angle (°)
a = 69.71 α = 115.34
b = 74.88 β = 93.06
c = 87.48 γ = 109.2
Symmetry
Space Group P 1

Diffraction

Diffraction Experiment
ID # Data Collection Temperature
1 110
Diffraction Detector
Detector Diffraction Type Details Collection Date
IMAGE PLATE MARRESEARCH OSMICS CONFOCAL MULTILAYER 2001-08-15
Diffraction Radiation
Monochromator Protocol
-- SINGLE WAVELENGTH
Diffraction Detector Source
Source Type Wavelength List Synchrotron Site Beamline
ROTATING ANODE RIGAKU RUH3R -- -- --

Data Collection

Overall
Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot
1.9 20 97.3 0.082 -- -- 2.5 -- 113754 -- -- --
High Resolution Shell
Resolution (High) Resolution (Low) Percent Possible (All) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All)
1.9 1.93 94.1 0.353 -- 2.2 2.4 --

Refinement

Statistics
Structure Solution Method Refinement High Resolution Refinement Low Resolution Cut-off Sigma (I) Cut-off Sigma (F) Number of Reflections (All) Number of Reflections (Observed) Number of Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work R-Free R-Free Selection Details
MOLECULAR REPLACEMENT 1.9 19.73 -- -- -- 111807 869 97.3 -- 0.152 0.151 0.186 RANDOM
High Resolution Shell
Refinement method Shell Resolution (High) Shell Resolution (Low) # of Reflections (Observed) # of Reflections (R-Free) # of Reflections (R-Work) R-Factor (R-Work) R-Factor (R-Free) R-Factor (R-Free Error) Percent Reflections (Observed)
X Ray Diffraction 1.9 1.95 -- 55 7963 0.224 0.28 -- --
Temperature Factor Modeling
Temperature Factor Value
Mean Isotropic B 16.67
Anisotropic B[1][1] 1.26
Anisotropic B[1][2] 0.53
Anisotropic B[1][3] -0.1
Anisotropic B[2][2] 0.02
Anisotropic B[2][3] -0.53
Anisotropic B[3][3] -1.4
RMS Deviations
Key Refinement Restraint Deviation
r_bond_other_d 0.002
r_dihedral_angle_1_deg 4.301
r_mcbond_it 0.799
r_angle_other_deg 1.812
r_chiral_restr 0.108
r_bond_refined_d 0.016
r_nbd_other 0.195
r_scangle_it 3.398
r_symmetry_vdw_other 0.192
r_nbtor_other 0.244
r_symmetry_vdw_refined 0.156
r_scbond_it 2.238
r_xyhbond_nbd_refined 0.119
r_symmetry_hbond_refined 0.083
r_gen_planes_refined 0.008
r_xyhbond_nbd_other 0.069
r_dihedral_angle_3_deg 15.88
r_angle_refined_deg 1.485
r_nbd_refined 0.224
r_gen_planes_other 0.004
r_mcangle_it 1.335
Number of Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms Numbers
Protein Atoms 11376
Nucleic Acid Atoms 0
Heterogen Atoms 82
Solvent Atoms 1285

Software

Software
Software Name Purpose
REFMAC refinement version: 5.0
DENZO data reduction
SCALEPACK data scaling