X-RAY DIFFRACTION Experimental Data & Validation


X-ray Experimental Help

Crystallization

Crystalization Experiments
pH 8
Details 30MG/ML, 15% PEG3350, 250MM MGCL2, 5MM TRIS PH8.0, 20% ETHYLENE GLYCOL 100MM GLUCURONIC ACID, pH 8.00

Crystal Data

Unit Cell
Length (Å) Angle (°)
a = 69.71 α = 115.34
b = 74.88 β = 93.06
c = 87.48 γ = 109.2
Symmetry
Space Group P 1

Diffraction

Diffraction Experiment
ID # Data Collection Temperature
1 110
Diffraction Detector
Detector Diffraction Type Details Collection Date
IMAGE PLATE MARRESEARCH OSMICS CONFOCAL MULTILAYER 2001-08-15
Diffraction Radiation
Monochromator Protocol
-- SINGLE WAVELENGTH
Diffraction Detector Source
Source Type Wavelength List Synchrotron Site Beamline
ROTATING ANODE RIGAKU H3RHB -- -- --

Data Collection

Overall
Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot
1.9 20 97.3 0.082 -- -- 2.5 -- 113754 -- -- --
High Resolution Shell
Resolution (High) Resolution (Low) Percent Possible (All) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All)
1.9 1.93 94.1 0.353 -- 2.2 2.4 --

Refinement

Statistics
Structure Solution Method Refinement High Resolution Refinement Low Resolution Cut-off Sigma (I) Cut-off Sigma (F) Number of Reflections (All) Number of Reflections (Observed) Number of Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work R-Free R-Free Selection Details
OTHER 1.9 19.73 -- -- -- 111807 869 97.3 -- 0.152 0.151 0.186 RANDOM
High Resolution Shell
Refinement method Shell Resolution (High) Shell Resolution (Low) # of Reflections (Observed) # of Reflections (R-Free) # of Reflections (R-Work) R-Factor (R-Work) R-Factor (R-Free) R-Factor (R-Free Error) Percent Reflections (Observed)
X Ray Diffraction 1.9 1.95 -- 55 7963 0.224 0.28 -- --
Temperature Factor Modeling
Temperature Factor Value
Mean Isotropic B 16.67
Anisotropic B[1][1] 1.26
Anisotropic B[1][2] 0.53
Anisotropic B[1][3] -0.1
Anisotropic B[2][2] 0.02
Anisotropic B[2][3] -0.53
Anisotropic B[3][3] -1.4
RMS Deviations
Key Refinement Restraint Deviation
r_scangle_it 3.398
r_scbond_it 2.238
r_mcangle_it 1.335
r_mcbond_it 0.799
r_nbd_refined 0.224
r_gen_planes_other 0.004
r_gen_planes_refined 0.008
r_chiral_restr 0.108
r_dihedral_angle_3_deg 15.88
r_dihedral_angle_1_deg 4.301
r_angle_other_deg 1.812
r_angle_refined_deg 1.485
r_bond_other_d 0.002
r_bond_refined_d 0.016
r_nbd_other 0.195
r_nbtor_other 0.244
r_xyhbond_nbd_refined 0.119
r_xyhbond_nbd_other 0.069
r_symmetry_vdw_refined 0.156
r_symmetry_vdw_other 0.192
r_symmetry_hbond_refined 0.083
Number of Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms Numbers
Protein Atoms 11376
Nucleic Acid Atoms 0
Heterogen Atoms 82
Solvent Atoms 1285

Software

Computing
Computing Package Purpose
DENZO Data Reduction (intensity integration)
SCALEPACK Data Reduction (data scaling)
REFMAC 5.0 Structure Refinement
Software
Software Name Purpose
REFMAC version: 5.0 refinement