X-RAY DIFFRACTION Experimental Data & Validation


X-ray Experimental Help

Crystallization

Crystalization Experiments
pH 9
Details pH 9.00

Crystal Data

Unit Cell
Length (Å) Angle (°)
a = 115.03 α = 90
b = 33.29 β = 119.08
c = 78.7 γ = 90
Symmetry
Space Group C 1 2 1

Diffraction

Diffraction Experiment
ID # Data Collection Temperature
1 287
Diffraction Detector
Detector Diffraction Type Details Collection Date
-- -- MIRRORS --
Diffraction Radiation
Monochromator Protocol
-- SINGLE WAVELENGTH
Diffraction Detector Source
Source Type Wavelength List Synchrotron Site Beamline
SYNCHROTRON EMBL/DESY, HAMBURG -- EMBL/DESY, HAMBURG --

Data Collection

Overall
Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot
1.65 10 96.3 -- -- -- 4.0 -- 28989 -- -- --

Refinement

Statistics
Structure Solution Method Refinement High Resolution Refinement Low Resolution Cut-off Sigma (I) Cut-off Sigma (F) Number of Reflections (All) Number of Reflections (Observed) Number of Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work R-Free R-Free Selection Details
MOLECULAR REPLACEMENT 1.65 10.0 -- -- -- 28989 1546 96.3 -- -- 0.14 0.176 RANDOM
High Resolution Shell
Refinement method Shell Resolution (High) Shell Resolution (Low) # of Reflections (Observed) # of Reflections (R-Free) # of Reflections (R-Work) R-Factor (R-Work) R-Factor (R-Free) R-Factor (R-Free Error) Percent Reflections (Observed)
X Ray Diffraction 1.65 1.69 -- 114 2029 0.144 0.175 -- --
RMS Deviations
Key Refinement Restraint Deviation
r_scangle_it 4.803
r_scbond_it 3.269
r_mcangle_it 2.771
r_mcbond_it 1.822
r_nbd_refined 0.189
r_gen_planes_other 0.005
r_gen_planes_refined 0.011
r_chiral_restr 0.149
r_dihedral_angle_3_deg 2.555
r_angle_other_deg 2.077
r_bond_other_d 0.003
r_bond_refined_d 0.018
r_nbd_other 0.154
r_nbtor_other 0.081
r_xyhbond_nbd_refined 0.177
r_symmetry_vdw_refined 0.129
r_symmetry_vdw_other 0.198
r_symmetry_hbond_refined 0.111
Number of Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms Numbers
Protein Atoms 1726
Nucleic Acid Atoms 0
Heterogen Atoms 0
Solvent Atoms 255

Software

Computing
Computing Package Purpose
DENZO Data Reduction (intensity integration)
SCALEPACK Data Reduction (data scaling)
BLANC Structure Solution
REFMAC 5.1.00 Structure Refinement
Software
Software Name Purpose
REFMAC version: 5.1.00 refinement
BLANC model building