X-RAY DIFFRACTION Experimental Data & Validation


X-ray Experimental Help

Crystallization

Crystalization Experiments
pH 7.5
Details pH 7.50

Crystal Data

Unit Cell
Length (Å) Angle (°)
a = 51.2 α = 90
b = 131.7 β = 105.9
c = 64 γ = 90
Symmetry
Space Group P 1 21 1

Diffraction

Diffraction Experiment
ID # Data Collection Temperature
1 100
Diffraction Detector
Detector Diffraction Type Details Collection Date
IMAGE PLATE (MAR300) MARRESEARCH -- --
Diffraction Radiation
Monochromator Protocol
-- SINGLE WAVELENGTH
Diffraction Detector Source
Source Type Wavelength List Synchrotron Site Beamline
SYNCHROTRON EMBL/DESY, HAMBURG BEAMLINE BW7B -- EMBL/DESY, HAMBURG BW7B

Data Collection

Overall
Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot
1.3 20 95.5 0.075 -- -- 3.6 -- 190229 -- -- 15.8
High Resolution Shell
Resolution (High) Resolution (Low) Percent Possible (All) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All)
1.3 1.31 82.0 0.244 -- 3.4 -- --

Refinement

Statistics
Structure Solution Method Refinement High Resolution Refinement Low Resolution Cut-off Sigma (I) Cut-off Sigma (F) Number of Reflections (All) Number of Reflections (Observed) Number of Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work R-Free R-Free Selection Details
MOLECULAR REPLACEMENT 1.8 30.0 -- 0.0 -- 74330 2297 96.5 -- -- 0.153 0.19 RANDOM
Temperature Factor Modeling
Temperature Factor Value
Mean Isotropic B 16.9
RMS Deviations
Key Refinement Restraint Deviation
p_planar_d 0.038
p_xyhbond_nbd 0.161
p_staggered_tor 13.5
p_bond_d 0.017
p_angle_d 0.034
p_planar_tor 4.1
p_plane_restr 0.0237
p_transverse_tor 27.2
p_chiral_restr 0.143
p_special_tor 15.0
p_scbond_it 4.657
p_singtor_nbd 0.169
p_scangle_it 5.791
p_mcbond_it 2.367
p_mcangle_it 2.84
p_multtor_nbd 0.253
Number of Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms Numbers
Protein Atoms 6078
Nucleic Acid Atoms 0
Heterogen Atoms 69
Solvent Atoms 701

Software

Computing
Computing Package Purpose
DENZO Data Reduction (intensity integration)
SCALEPACK Data Reduction (data scaling)
AMORE Structure Solution
REFMAC Structure Refinement
Software
Software Name Purpose
REFMAC refinement
AMORE model building