X-RAY DIFFRACTION Experimental Data & Validation


X-ray Experimental Help

Crystallization

Crystalization Experiments
pH 5
Details pH 5.00

Crystal Data

Unit Cell
Length (Å) Angle (°)
a = 133.7 α = 90
b = 144.6 β = 113.82
c = 84.02 γ = 90
Symmetry
Space Group C 1 2 1

Diffraction

Diffraction Experiment
ID # Data Collection Temperature
1 100
Diffraction Detector
Detector Diffraction Type Details Collection Date
-- -- -- --
Diffraction Radiation
Monochromator Protocol
-- SINGLE WAVELENGTH
Diffraction Detector Source
Source Type Wavelength List Synchrotron Site Beamline
SYNCHROTRON ESRF BEAMLINE ID14-1 -- ESRF ID14-1

Data Collection

Overall
Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot
3.25 20 98.3 0.039 -- -- 2.2 -- 22945 -- -- --

Refinement

Statistics
Structure Solution Method Refinement High Resolution Refinement Low Resolution Cut-off Sigma (I) Cut-off Sigma (F) Number of Reflections (All) Number of Reflections (Observed) Number of Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work R-Free R-Free Selection Details
MIR 3.24 20.0 -- -- -- 21822 1191 99.3 -- 0.275 0.272 0.328 RANDOM
High Resolution Shell
Refinement method Shell Resolution (High) Shell Resolution (Low) # of Reflections (Observed) # of Reflections (R-Free) # of Reflections (R-Work) R-Factor (R-Work) R-Factor (R-Free) R-Factor (R-Free Error) Percent Reflections (Observed)
X Ray Diffraction 3.24 3.32 -- 70 1417 0.322 0.404 -- --
Temperature Factor Modeling
Temperature Factor Value
Mean Isotropic B 94.26
Anisotropic B[1][1] 5.86
Anisotropic B[1][2] 0.0
Anisotropic B[1][3] 4.7
Anisotropic B[2][2] 1.84
Anisotropic B[2][3] 0.0
Anisotropic B[3][3] -3.9
RMS Deviations
Key Refinement Restraint Deviation
r_scangle_it 24.785
r_scbond_it 17.804
r_mcangle_it 16.211
r_mcbond_it 10.149
r_nbd_refined 0.516
r_gen_planes_refined 0.007
r_chiral_restr 0.141
r_dihedral_angle_3_deg 30.826
r_dihedral_angle_1_deg 9.181
r_angle_refined_deg 2.607
r_bond_refined_d 0.02
r_xyhbond_nbd_refined 0.365
r_symmetry_vdw_refined 0.912
r_symmetry_hbond_refined 0.574
Number of Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms Numbers
Protein Atoms 5919
Nucleic Acid Atoms 832
Heterogen Atoms 28
Solvent Atoms 0

Software

Computing
Computing Package Purpose
REFMAC 5.0 Structure Refinement
Software
Software Name Purpose
REFMAC version: 5.0 refinement