X-RAY DIFFRACTION Experimental Data & Validation


X-ray Experimental Help

Crystallization

Crystalization Experiments
pH 8
Details HANGING DROP, 30MG/ML, 10+10 UL 1 ML WELL, TRIS/HCL PH 8.0, 25%

Crystal Data

Unit Cell
Length (Å) Angle (°)
a = 118.7 α = 90
b = 101.38 β = 90
c = 111.97 γ = 90
Symmetry
Space Group C 2 2 21

Diffraction

Diffraction Experiment
ID # Data Collection Temperature
1 120
Diffraction Detector
Detector Diffraction Type Details Collection Date
AREA DETECTOR ADSC COLLIMATOR 0.5 MM 1995-07-15
Diffraction Radiation
Monochromator Protocol
SUPPER GRAPHITE SINGLE WAVELENGTH
Diffraction Detector Source
Source Type Wavelength List Synchrotron Site Beamline
ROTATING ANODE RU200 -- -- --

Data Collection

Overall
Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot
1.56 38.63 77.0 0.035 -- -- 3.2 -- 73179 -- -- --
High Resolution Shell
Resolution (High) Resolution (Low) Percent Possible (All) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All)
1.56 1.6 46.0 0.249 -- 2.1 2.5 --

Refinement

Statistics
Structure Solution Method Refinement High Resolution Refinement Low Resolution Cut-off Sigma (I) Cut-off Sigma (F) Number of Reflections (All) Number of Reflections (Observed) Number of Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work R-Free R-Free Selection Details
MOLECULAR REPLACEMENT 1.56 38.63 -- -- -- 65794 7385 76.9 -- 0.18 0.178 0.206 RANDOM
High Resolution Shell
Refinement method Shell Resolution (High) Shell Resolution (Low) # of Reflections (Observed) # of Reflections (R-Free) # of Reflections (R-Work) R-Factor (R-Work) R-Factor (R-Free) R-Factor (R-Free Error) Percent Reflections (Observed)
X Ray Diffraction 1.56 1.58 -- 124 1070 0.275 0.273 -- --
RMS Deviations
Key Refinement Restraint Deviation
r_scangle_it 2.915
r_scbond_it 1.973
r_mcangle_it 1.993
r_mcbond_it 1.18
r_nbd_refined 0.21
r_gen_planes_refined 0.009
r_chiral_restr 0.153
r_dihedral_angle_3_deg 17.798
r_dihedral_angle_1_deg 5.566
r_angle_other_deg 1.849
r_bond_refined_d 0.019
r_xyhbond_nbd_refined 0.129
r_symmetry_vdw_refined 0.211
r_symmetry_hbond_refined 0.232
Number of Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms Numbers
Protein Atoms 3618
Nucleic Acid Atoms 0
Heterogen Atoms 6
Solvent Atoms 688

Software

Computing
Computing Package Purpose
ADSC Data Reduction (intensity integration)
DATAMAN, FCALC Data Reduction (data scaling)
EPMR Structure Solution
REFMAC 5.0 Structure Refinement
Software
Software Name Purpose
REFMAC version: 5.0 refinement
EPMR model building