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139555
Biological Macromolecular Structures Enabling Breakthroughs in Research and Education
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Structure Summary
3D View
Annotations
Sequence
Sequence Similarity
Structure Similarity
Experiment
1FJ2
Crystal structure of the human acyl protein thioesterase 1 at 1.5 A resolution
Display Files
FASTA Sequence
PDB File
PDB File (Header)
mmCIF File
mmCIF File (Header)
PDBML/XML File
PDBML/XML File (Header)
Download Files
FASTA Sequence
PDB File (Text)
PDB File (gz)
PDBx/mmCIF File
PDBx/mmCIF File (gz)
PDBML/XML File
PDBML/XML File (gz)
Structure Factor (Text)
Structure Factor (gz)
Biological Assembly 1 (gz) (A)
Biological Assembly 2 (gz) (A)
Biological Assembly 3 (gz) (S)
X-RAY DIFFRACTION Experimental Data & Validation
X-ray Experimental Help
Crystallization
Crystalization Experiments
Method
Vapor Diffusion Hanging Drop
pH
5
Temperature
293.0
Details
28 - 32% OF SATURATED AMMONIUM SULFATE, 0.1 M SODIUM ACETATE, DI-THIO-THREITOL, pH 5.0, VAPOR DIFFUSION, HANGING DROP, temperature 293K
Crystal Data
Unit Cell
Length (Å)
Angle (°)
a = 39.59
α = 90
b = 127.89
β = 102.8
c = 39.66
γ = 90
Symmetry
Space Group
P 1 21 1
Diffraction
Diffraction Experiment
ID #
Data Collection Temperature
1
100
Diffraction Detector
Detector
Diffraction Type
Details
Collection Date
CCD
ADSC QUANTUM
--
2000-04-03
Diffraction Radiation
Monochromator
Protocol
--
SINGLE WAVELENGTH
Diffraction Detector Source
Source
Type
Wavelength List
Synchrotron Site
Beamline
SYNCHROTRON
NSLS BEAMLINE X9B
--
NSLS
X9B
Data Collection
Overall
Resolution (High)
Resolution (Low)
Percent Possible (Observed)
R Merge I (Observed)
R Sym I (Observed)
Net I Over Average Sigma (I)
Redundancy
Number Reflections (All)
Number Reflections (Observed)
Observed Criterion Sigma (F)
Observed Criterion Sigma (I)
B (Isotropic) From Wilson Plot
1.48
30
80.0
0.052
--
--
2.2
163216
50736
1.0
1.0
15.2
High Resolution Shell
Resolution (High)
Resolution (Low)
Percent Possible (All)
R Merge I (Observed)
R-Sym I (Observed)
Mean I Over Sigma (Observed)
Redundancy
Number Unique Reflections (All)
1.48
1.53
27.0
0.32
--
2.5
1.6
--
Refinement
Statistics
Structure Solution Method
Refinement High Resolution
Refinement Low Resolution
Cut-off Sigma (I)
Cut-off Sigma (F)
Number of Reflections (All)
Number of Reflections (Observed)
Number of Reflections (R-Free)
Percent Reflections (Observed)
R-Factor (All)
R-Factor (Observed)
R-Work
R-Free
R-Free Selection Details
--
1.5
20.0
--
1.0
--
50223
1293
80.0
--
--
0.183
0.237
random
RMS Deviations
Key
Refinement Restraint Deviation
p_angle_d
0.031
p_plane_restr
0.013
p_transverse_tor
23.3
p_mcbond_it
1.4
p_planar_d
0.038
p_scangle_it
3.1
p_staggered_tor
14.7
p_chiral_restr
0.089
p_scbond_it
2.1
p_singtor_nbd
0.18
p_xyhbond_nbd
0.12
p_multtor_nbd
0.26
p_planar_tor
7.0
p_bond_d
0.019
p_mcangle_it
2.1
Number of Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms
Numbers
Protein Atoms
3454
Nucleic Acid Atoms
0
Heterogen Atoms
40
Solvent Atoms
465
Software
Software
Software Name
Purpose
DENZO
data reduction
SCALEPACK
data scaling
SnB
phasing
SHARP
phasing
DM
model building
WARP
model building
REFMAC
refinement
DM
phasing