X-RAY DIFFRACTION Experimental Data & Validation


X-ray Experimental Help

Crystallization

Crystalization Experiments
pH 5
Temperature 298.0
Details PEG 1000, PEG 8000, pH 5.0, VAPOR DIFFUSION, HANGING DROP, temperature 298K

Crystal Data

Unit Cell
Length (Å) Angle (°)
a = 46.09 α = 90
b = 56.57 β = 95.54
c = 46.75 γ = 90
Symmetry
Space Group P 1 21 1

Diffraction

Diffraction Experiment
ID # Data Collection Temperature
1 100
Diffraction Detector
Detector Diffraction Type Details Collection Date
IMAGE PLATE RIGAKU RAXIS II -- 2000-04-12
Diffraction Radiation
Monochromator Protocol
-- SINGLE WAVELENGTH
Diffraction Detector Source
Source Type Wavelength List Synchrotron Site Beamline
ROTATING ANODE RIGAKU RU200 -- -- --

Data Collection

Overall
Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot
1.9 20 90.0 0.05 -- -- 4.9 -- 17383 -- 0.0 15.9
High Resolution Shell
Resolution (High) Resolution (Low) Percent Possible (All) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All)
1.9 2.0 88.7 0.11 -- -- 2.9 --

Refinement

Statistics
Structure Solution Method Refinement High Resolution Refinement Low Resolution Cut-off Sigma (I) Cut-off Sigma (F) Number of Reflections (All) Number of Reflections (Observed) Number of Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work R-Free R-Free Selection Details
-- 1.9 20.0 -- 0.0 17091 17091 825 90.0 0.175 0.175 0.169 0.254 Thin Shells
Temperature Factor Modeling
Temperature Factor Value
Isotropic Thermal Model TNT BCORREL VERSION 1.0
RMS Deviations
Key Refinement Restraint Deviation
t_bond_d 0.005
t_it 2.994
t_trig_c_planes 0.004
t_gen_planes 0.008
t_dihedral_angle_d 16.292
t_angle_deg 1.439
t_nbd 0.025
Number of Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms Numbers
Protein Atoms 2002
Nucleic Acid Atoms 0
Heterogen Atoms 2
Solvent Atoms 254

Software

Software
Software Name Purpose
AMoRE phasing
TNT refinement
MOSFLM data reduction
CCP4 data scaling version: (SCALA)