SOLUTION NMR - THEORETICAL MODEL Experimental Data


Structure 1E08 has been solved using multiple methods: SOLUTION NMR - THEORETICAL MODEL

Experimental Details
Sample Conditions
Sample Contents10% D2O/90% WATER
Solventn/a
Ionic Strength10MM TRIS/HCL
pH7.6
Pressure1
Temperature (K)296
Experiment(s):TROSY
Spectrometer Information
Manufacturer Model Field Strength
BRUKER DRX500 500.0
NMR Refinement
Details THE DEPOSITED STRUCTURE IS THE RESULT OF A HETERONUCLEAR NMR EXPERIMENT AND DOCKING SIMULATIONS. THE FINAL RESULT WAS MINIMIZED BY MOLECULAR DYNAMIC MINIMIZATION.
NMR Ensemble Information
Conformer Selection Criteria LEAST SHIFT VARIATION VIOLATION
Conformers Calculated Total Number 1000
Conformers Submitted Total Number 1
Additional NMR Experimental Information
1 COMBINED DOCKING AND NMR FILTERING SOLUTION. THE TROSY EXPERIMENT WAS PERFORMED ON THE 15N-LABELED CYTOCHROME WITH SUBSEQUENTLY ADDING OF THE HYDROGENASE. THE RESIDUES HAVING THE STRONGEST SHIFTS WERE USED TO FILTER THE DOCKING SOLUTIONS.THE AMINO-ACIDS ALA E5, CYS E10, HIS E14, GLY E15, ALA E16, ALA E22, GLY E24, VAL E29, GLN E32, LYS E54, ASN E59, ALA E60 OF THE CYTOCHROME C553 SHOW STRONGEST SHIFTS IN THE TROSY EXPERIMENTS. EACH TIME ONE OF THE AMINO ACIDS IS IN CONTACT (LESS THAN 5A IN THE COMPLEX) WITH ITS PARTNER ONE POINT IS ATTRIBUTED TO THE STRUCTURE. THEN THE ONE THOUSAND BEST STRUCTURES ARE RANKED ACCORDING TO THIS CRITERIUM AND THE 10 BEST SOLUTIONS ARE MINIMISED. A COMPARISON OF THESE SOLUTIONS GENERATES STRUCTURE WITH 5 IDENTICAL SOLUTIONS
Computation: NMR Software
# Classification Software Name Author
1 structure solution BRUKER UXNMR n/a
2 refinement X-PLOR 3.843 BRUNGER