X-RAY DIFFRACTION Experimental Data & Validation


X-ray Experimental Help

Crystallization

Crystalization Experiments
pH 7.4
Details 1.55M AMMONIUM FORMATE, 0.1M HEPES 7.4, pH 7.40

Crystal Data

Unit Cell
Length (Å) Angle (°)
a = 59.69 α = 61.08
b = 79.33 β = 78.22
c = 81.95 γ = 70.54
Symmetry
Space Group P 1

Diffraction

Diffraction Experiment
ID # Data Collection Temperature
1 100
Diffraction Detector
Detector Diffraction Type Details Collection Date
IMAGE PLATE MARRESEARCH -- --
Diffraction Radiation
Monochromator Protocol
-- SINGLE WAVELENGTH
Diffraction Detector Source
Source Type Wavelength List Synchrotron Site Beamline
SYNCHROTRON ELETTRA BEAMLINE 5.2R -- ELETTRA 5.2R

Data Collection

Overall
Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot
2.6 40 95.4 0.051 -- -- 1.7 -- 36284 -- -- 52.0
High Resolution Shell
Resolution (High) Resolution (Low) Percent Possible (All) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All)
2.6 2.69 91.6 0.25 -- 2.6 1.6 --

Refinement

Statistics
Structure Solution Method Refinement High Resolution Refinement Low Resolution Cut-off Sigma (I) Cut-off Sigma (F) Number of Reflections (All) Number of Reflections (Observed) Number of Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work R-Free R-Free Selection Details
MOLECULAR REPLACEMENT 2.6 20.0 -- 0.0 -- 34446 1767 95.0 -- -- 0.232 0.268 RANDOM
Temperature Factor Modeling
Temperature Factor Value
Mean Isotropic B 37.0
Anisotropic B[1][1] 8.28
Anisotropic B[1][2] -0.55
Anisotropic B[1][3] -1.07
Anisotropic B[2][2] -3.92
Anisotropic B[2][3] -0.5
Anisotropic B[3][3] -4.32
RMS Deviations
Key Refinement Restraint Deviation
p_transverse_tor 34.4
p_staggered_tor 18.0
p_planar_tor 3.7
p_xyhbond_nbd 0.19
p_multtor_nbd 0.27
p_bond_d 0.013
p_angle_d 0.043
p_planar_d 0.053
p_mcbond_it 2.8
p_mcangle_it 4.3
p_scbond_it 4.1
p_scangle_it 5.1
p_plane_restr 0.017
p_chiral_restr 0.16
p_singtor_nbd 0.21
Number of Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms Numbers
Protein Atoms 7548
Nucleic Acid Atoms 0
Heterogen Atoms 0
Solvent Atoms 74

Software

Computing
Computing Package Purpose
DENZO Data Reduction (intensity integration)
SCALEPACK Data Reduction (data scaling)
AMORE Structure Solution
REFMAC Structure Refinement
Software
Software Name Purpose
REFMAC refinement
AMORE model building