Heteronuclear NMR and Soft Docking: An Experimental Approach for a Structural Model of the Cytochrome C553-Ferredoxin Complex

Morelli, X; Dolla, A; Czjzek, M; Palma, P.N; Blasco, F; Krippahl, L; Moura, J.J.G; Guerlesquin, F.

Sample Conditions

Sample Contents

10% D2O/90% WATER

Solvent

n/a

Ionic Strength

n/a

5.9

Pressure

n/a

Temperature (K)

296

Experiment(s):

HSQC

Spectrometer Information

Manufacturer

Model

Field Strength

Bruker

DRX

500.0

NMR Refinement

Method

MAPPING OF THE CHEMICAL SHIFT VARIATIONS

Details

MOLECULAR DYNAMICS CALCULATION USING AMBER FORCE FIELD THESE ARE 3 MODEL STRUCTURES FOR THE COMPLEX OF CYTOCHROME C553 WITH FERREDOXIN I

NMR Ensemble Information

Conformer Selection Criteria

COMBINATION OF NMR SHIFT VARIATION AND A SOFT DOCKING ALGORITHM

Conformers Submitted Total Number

Representative Model Choice Rationale

n/a

Additional NMR Experimental Information

HETERONUCLEAR EXPERIMENTS ON 15N-LABELED FERREDOXIN AND CYTOCHROME, CHEMICAL SHIFT VARIATION ANALYSIS

Computation: NMR Software

Classification

Software Name

Author

refinement version: 3.851

X-PLOR

BRUNGER

RCSB Partners
Nucleic Acid Database

RCSB PDB (citation) is managed by two members of the
Research Collaboratory for Structural Bioinformatics:
Rutgers and UCSD/SDSC

RCSB PDB is a member of the

141209 Biological Macromolecular Structures Enabling Breakthroughs in Research and Education

1DWL

The Ferredoxin-Cytochrome complex using heteronuclear NMR and docking simulation

SOLUTION NMR - - THEORETICAL MODEL Experimental Data

Structure 1DWL has been solved using multiple methods: SOLUTION NMR - - THEORETICAL MODEL

Experimental Details

Prepare Data

Validate Data