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X-RAY DIFFRACTION
Materials and Methods page
1DKU
  •   Crystallization Hide
    Crystallization Experiments
    Method VAPOR DIFFUSION, SITTING DROP
    pH 8
    Temperature 293.0
    Details Sodium citrate, Hepes, alpha,beta-methylene ADP, Magnesium chloride, beta- octylglucoside , pH 8.0, VAPOR DIFFUSION, SITTING DROP, temperature 293K
     
  •   Crystal Data Hide
    Unit Cell
    Length    (Å) Angle    (°)
    a = 115.65 α = 90
    b = 115.65 β = 90
    c = 106.41 γ = 120
     
    Space Group
    Space Group Name:    P 63
     
     
  •   Diffraction Hide
    Diffraction Experiment
    Diffrn ID 1
    Data Collection Temperature 285
     
    Diffraction Detector
    Detector IMAGE PLATE
    Type MARRESEARCH
    Collection Date 1996-11-27
     
    Diffraction Radiation
    Diffraction Protocol SINGLE WAVELENGTH
     
    Diffraction Source
    Source SYNCHROTRON
    Type EMBL/DESY, HAMBURG BEAMLINE BW7A
    Wavelength 0.912
    Site EMBL/DESY, HAMBURG
    Beamline BW7A
     
     
  •   Refinement Data Hide
    Reflection Details
    Observed Criterion Sigma(I) 0.0
    Resolution(High) 1.7
    Resolution(Low) 23
    Number Reflections(Observed) 83506
    Percent Possible(Observed) 97.3
    R Merge I(Observed) 0.129
    B(Isotropic) From Wilson Plot 20.7
    Redundancy 3.1
     
    High Resolution Shell Details
    Resolution(High) 1.7
    Resolution(Low) 1.79
    Percent Possible(All) 93.4
    R Merge I(Observed) 0.037
    Redundancy 2.7
     
     
  •   Refinement Hide
    Refinement Statistics
    reflnsShellList 2.2
    Resolution(Low) 30.0
    Cut-off Sigma(F) 0.0
    Number of Reflections(Observed) 40252
    Number of Reflections(R-Free) 4093
    R-Factor(Observed) 0.198
    R-Work 0.198
    R-Free 0.241
    R-Free Selection Details SELECTED IN CONSISTENCE WITH THE R-FREE DATA FOR STRUCTURE ID CODE 1DKR
     
    Temperature Factor Modeling
    Data Not Available
     
    RMS Deviations
    Parameter Type Deviation from Ideal
    x_bond_d 0.016
     
    Number of Non-Hydrogen Atoms Used in Refinement
    Protein Atoms 4544
    Nucleic Acid Atoms 0
    Heterogen Atoms 100
    Solvent Atoms 180
     
     
  •   Software and Computing Hide
    Computing
    Data Reduction (intensity integration) SOFTWARE AT SYNCHROTRON
    Data Reduction (data scaling) CCP4 (AGROVATA, ROTAVATA, TRUNCATE)
    Structure Solution X-PLOR
    Structure Refinement X-PLOR 3.1
     
    Software
    refinement X-PLOR version: 3.1
    model building X-PLOR