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Biological Macromolecular Structures Enabling Breakthroughs in Research and Education
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Structure Summary
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Sequence
Sequence Similarity
Structure Similarity
Experiment
1D2J
LDL RECEPTOR LIGAND-BINDING MODULE 6
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FASTA Sequence
PDB File
PDB File (Header)
mmCIF File
mmCIF File (Header)
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FASTA Sequence
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NMR Restraints (Text)
NMR Restraints (gz)
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SOLUTION NMR Experimental Data
Experimental Details
Sample Conditions
Sample Contents
1 MM LR6 U-15N; 10 MM CACL2
Solvent
n/a
Ionic Strength
10 mM
pH
5.2
Pressure
1
Temperature (K)
298
Experiment(s):
3D_15N-SEPARATED_NOESY, HMQC-J
Sample Contents
1 MM LR6 U-15N; 10 MM CACL2
Solvent
n/a
Ionic Strength
10 mM
pH
5.2
Pressure
1
Temperature (K)
298
Experiment(s):
HYDROGEN EXCHANGE
Sample Contents
1 MM LR6 UNLABELED; 10 MM CACL2
Solvent
n/a
Ionic Strength
10 mM
pH
5.2
Pressure
1
Temperature (K)
298
Experiment(s):
2D NOESY
Sample Contents
1 MM LR6 UNLABELED; 10 MM CACL2
Solvent
n/a
Ionic Strength
10 mM
pH
5.2
Pressure
1
Temperature (K)
298
Experiment(s):
2D NOESY
Spectrometer Information
Manufacturer
Model
Field Strength
Varian
UNITY
500.0
Varian
UNITYPLUS
400.0
NMR Refinement
Method
SIMULATED ANNEALING IN TORSION ANGLE SPACE FOLLOWED BY SIMULATED ANNEALING REFINEMENT IN 3D COORDINATE SPACE.
Details
541 UNIQUE NOE DISTANCES, 3 DISULFIDE BONDS, 9 H-BONDS, 17 DISTANCES DEFINE THE CA++ BINDING SITE, 17 PHI ANGLES DERIVED FROM J-HNHA MEASUREMENTS
NMR Ensemble Information
Conformer Selection Criteria
structures with the lowest energy
Conformers Calculated Total Number
60
Conformers Submitted Total Number
20
Representative Model Choice Rationale
1
lowest energy
Computation: NMR Software
#
Classification
Software Name
Author
1
processing version: 97.0
FELIX
MSI
2
data analysis version: 1.3.13
XEASY
CH. BARTELS, T.-H. XIA, M. BILLETER, P. GUNTERT AND K. WUTHRICH
3
structure solution version: 1.5
DYANA
P. GUNTERT, C. MUMENTHALER, T. HERRMANN
4
refinement version: 3.8.1
X-PLOR
A. BRUNGER