X-RAY DIFFRACTION Experimental Data & Validation


X-ray Experimental Help

Crystallization

Crystalization Experiments
pH 7.2
Details CRYSTALLIZED FROM 30% PEG 4000 SOLUTION., pH 7.2

Crystal Data

Unit Cell
Length (Å) Angle (°)
a = 152.09 α = 90
b = 30.77 β = 133.15
c = 105.94 γ = 90
Symmetry
Space Group C 1 2 1

Diffraction

Diffraction Experiment
ID # Data Collection Temperature
1 290
Diffraction Detector
Detector Diffraction Type Details Collection Date
AREA DETECTOR SIEMENS -- 1995
Diffraction Radiation
Monochromator Protocol
GRAPHITE(002) --
Diffraction Detector Source
Source Type Wavelength List Synchrotron Site Beamline
ROTATING ANODE RIGAKU RUH2R -- -- --

Data Collection

Overall
Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot
2.3 21.6 82.8 0.051 -- -- 1.7 -- 13627 -- 2.0 --

Refinement

Statistics
Structure Solution Method Refinement High Resolution Refinement Low Resolution Cut-off Sigma (I) Cut-off Sigma (F) Number of Reflections (All) Number of Reflections (Observed) Number of Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work R-Free R-Free Selection Details
MOLECULAR REPLACEMENT 2.3 8.0 -- 2.0 -- 12501 -- 78.1 -- -- 0.175 -- --
Temperature Factor Modeling
Temperature Factor Value
Mean Isotropic B 30.5
RMS Deviations
Key Refinement Restraint Deviation
p_planar_d 0.028
p_mcbond_it 3.298
p_staggered_tor 16.8
p_angle_d 0.024
p_planar_tor 1.3
p_scbond_it 5.797
p_transverse_tor 14.5
p_chiral_restr 0.131
p_xyhbond_nbd 0.174
p_singtor_nbd 0.18
p_plane_restr 0.008
p_multtor_nbd 0.189
p_bond_d 0.008
p_mcangle_it 5.174
p_scangle_it 8.726
Coordinate Error
Parameter Value
Luzzati ESD (Observed) 0.23
Number of Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms Numbers
Protein Atoms 2114
Nucleic Acid Atoms 0
Heterogen Atoms 0
Solvent Atoms 56

Software

Software
Software Name Purpose
X-PLOR model building
PROFFT refinement
X-PLOR refinement
XDS data reduction
XSCALE data scaling
X-PLOR phasing