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An Information Portal to 105906 Biological Macromolecular Structures

SOLUTION NMR
Materials and Methods page
1C05
  •   NMR Eperiment Details Hide
    Representative Model Choice Rationale
    minimized average structure  
     
    Spectrometer Info
    Field Strength 500.0
    Manufacturer Bruker
    Model DMX
    Field Strength 750.0
    Manufacturer Bruker
    Model DMX
     
    Sample Conditions
    IDs solution ID:1 condition ID:1
    Sample Contents 1.1 mM S4 delta 41, U-15N,13C; 20 mM d4-acetate pH 5.4, 250 mM KCl, 0.1 mM sodium azide
    Solvent System 94% H2O, 6% D2O
    Ionic Strength 250 mM KCl
    pH 5.4
    Pressure 1
    Pressure Units ATM
    Temperature 310
    IDs solution ID:1 condition ID:2
    Sample Contents 1.1 mM S4 delta 41, U-15N,13C; 20 mM d4-acetate pH 5.4, 250 mM KCl, 0.1 mM sodium azide
    Solvent System 94% H2O, 6% D2O
    Ionic Strength 80 mM KCl
    pH 6.0
    Pressure 1
    Pressure Units ATM
    Temperature 310
    IDs solution ID:1 condition ID:3
    Sample Contents 1.1 mM S4 delta 41, U-15N,13C; 20 mM d4-acetate pH 5.4, 250 mM KCl, 0.1 mM sodium azide
    Solvent System 94% H2O, 6% D2O
    Ionic Strength 300 mM KCl
    pH 6.5
    Pressure 1
    Pressure Units ATM
    Temperature 310
    IDs solution ID:2 condition ID:1
    Sample Contents 0.8 mM S4 delta 41, U-15N; 20 mM d4-acetate pH 5.4, 250 mM KCl, 0.1 mM sodium azide
    Solvent System 94% H2O, 6% D2O
    Ionic Strength 250 mM KCl
    pH 5.4
    Pressure 1
    Pressure Units ATM
    Temperature 310
    IDs solution ID:2 condition ID:2
    Sample Contents 0.8 mM S4 delta 41, U-15N; 20 mM d4-acetate pH 5.4, 250 mM KCl, 0.1 mM sodium azide
    Solvent System 94% H2O, 6% D2O
    Ionic Strength 80 mM KCl
    pH 6.0
    Pressure 1
    Pressure Units ATM
    Temperature 310
    IDs solution ID:2 condition ID:3
    Sample Contents 0.8 mM S4 delta 41, U-15N; 20 mM d4-acetate pH 5.4, 250 mM KCl, 0.1 mM sodium azide
    Solvent System 94% H2O, 6% D2O
    Ionic Strength 300 mM KCl
    pH 6.5
    Pressure 1
    Pressure Units ATM
    Temperature 310
    IDs solution ID:3 condition ID:1
    Sample Contents 0.45 mM S4 delta 41, U-15N,13C; 20 mM d4-acetate pH 5.4, 250 mM KCl
    Solvent System 99.9% D2O
    Ionic Strength 250 mM KCl
    pH 5.4
    Pressure 1
    Pressure Units ATM
    Temperature 310
    IDs solution ID:3 condition ID:2
    Sample Contents 0.45 mM S4 delta 41, U-15N,13C; 20 mM d4-acetate pH 5.4, 250 mM KCl
    Solvent System 99.9% D2O
    Ionic Strength 80 mM KCl
    pH 6.0
    Pressure 1
    Pressure Units ATM
    Temperature 310
    IDs solution ID:3 condition ID:3
    Sample Contents 0.45 mM S4 delta 41, U-15N,13C; 20 mM d4-acetate pH 5.4, 250 mM KCl
    Solvent System 99.9% D2O
    Ionic Strength 300 mM KCl
    pH 6.5
    Pressure 1
    Pressure Units ATM
    Temperature 310
    IDs solution ID:4 condition ID:1
    Sample Contents 0.62 mM S4 delta 41, 10% 13C; 20 mM d4-acetate pH 5.4, 250 mM KCl
    Solvent System 99.9% D2O
    Ionic Strength 250 mM KCl
    pH 5.4
    Pressure 1
    Pressure Units ATM
    Temperature 310
    IDs solution ID:4 condition ID:2
    Sample Contents 0.62 mM S4 delta 41, 10% 13C; 20 mM d4-acetate pH 5.4, 250 mM KCl
    Solvent System 99.9% D2O
    Ionic Strength 80 mM KCl
    pH 6.0
    Pressure 1
    Pressure Units ATM
    Temperature 310
    IDs solution ID:4 condition ID:3
    Sample Contents 0.62 mM S4 delta 41, 10% 13C; 20 mM d4-acetate pH 5.4, 250 mM KCl
    Solvent System 99.9% D2O
    Ionic Strength 300 mM KCl
    pH 6.5
    Pressure 1
    Pressure Units ATM
    Temperature 310
    IDs solution ID:5 condition ID:1
    Sample Contents 0.10 mM S4 delta 41, U-15N; 7 mM d4-acetate pH 5.4, 7 mM KH2PO4 pH 6.5, 80 mM KCl, 5% w/v DMPC:DHPC (3:1)
    Solvent System 93% H2O, 7% D2O
    Ionic Strength 250 mM KCl
    pH 5.4
    Pressure 1
    Pressure Units ATM
    Temperature 310
    IDs solution ID:5 condition ID:2
    Sample Contents 0.10 mM S4 delta 41, U-15N; 7 mM d4-acetate pH 5.4, 7 mM KH2PO4 pH 6.5, 80 mM KCl, 5% w/v DMPC:DHPC (3:1)
    Solvent System 93% H2O, 7% D2O
    Ionic Strength 80 mM KCl
    pH 6.0
    Pressure 1
    Pressure Units ATM
    Temperature 310
    IDs solution ID:5 condition ID:3
    Sample Contents 0.10 mM S4 delta 41, U-15N; 7 mM d4-acetate pH 5.4, 7 mM KH2PO4 pH 6.5, 80 mM KCl, 5% w/v DMPC:DHPC (3:1)
    Solvent System 93% H2O, 7% D2O
    Ionic Strength 300 mM KCl
    pH 6.5
    Pressure 1
    Pressure Units ATM
    Temperature 310
    IDs solution ID:6 condition ID:1
    Sample Contents 0.21 mM S4 delta 41, U-15N, 85% 2H; 15N,13C,1H methionine; epsilon-13C, 1H tyrsoine; beta,gamma,delta 2H proline; 10 mM KH2PO4 pH 6.5, 300 mM KCl, 0.2 mM sodium azide, 2.5 mg/ml Pf1
    Solvent System 94% H2O, 6% D2O
    Ionic Strength 250 mM KCl
    pH 5.4
    Pressure 1
    Pressure Units ATM
    Temperature 310
    IDs solution ID:6 condition ID:2
    Sample Contents 0.21 mM S4 delta 41, U-15N, 85% 2H; 15N,13C,1H methionine; epsilon-13C, 1H tyrsoine; beta,gamma,delta 2H proline; 10 mM KH2PO4 pH 6.5, 300 mM KCl, 0.2 mM sodium azide, 2.5 mg/ml Pf1
    Solvent System 94% H2O, 6% D2O
    Ionic Strength 80 mM KCl
    pH 6.0
    Pressure 1
    Pressure Units ATM
    Temperature 310
    IDs solution ID:6 condition ID:3
    Sample Contents 0.21 mM S4 delta 41, U-15N, 85% 2H; 15N,13C,1H methionine; epsilon-13C, 1H tyrsoine; beta,gamma,delta 2H proline; 10 mM KH2PO4 pH 6.5, 300 mM KCl, 0.2 mM sodium azide, 2.5 mg/ml Pf1
    Solvent System 94% H2O, 6% D2O
    Ionic Strength 300 mM KCl
    pH 6.5
    Pressure 1
    Pressure Units ATM
    Temperature 310
     
     
  •   NMR Refinement Information Hide
    Refinement
    Method hybrid DGSA protocol without the dipolar coupling restraints followed by additional SA with the dipolar coupling restraints add
    Details SUMMARY OF RESTRAINTS: 2170 NOE, 86 HYDROGEN BOND, 114 DIHEDRAL ANGLE, AND 101 DIPOLAR COUPLINGS
     
  •   NMR Ensemble Information Hide
    Ensemble
    Conformers Submitted Total Number 1
     
  •   NMR Experimental Information Hide
    Experiment
    IDs experiment ID:1 solution ID:1 conditons ID:1
    Type 3D_15N-separated_NOESY
    IDs experiment ID:2 solution ID:3 conditons ID:1
    Type 3D_13C-separated_NOESY
    IDs experiment ID:3 solution ID:3 conditons ID:1
    Type 4D_13C-separated_NOESY
    IDs experiment ID:4 solution ID:1 conditons ID:1
    Type HNHA
    IDs experiment ID:5 solution ID:5 conditons ID:2
    Type IPAP 15N HSQC
     
  •   Additional NMR Experimental Information Hide
    Details
    Detail This structure was determined with NOE restraints from multidimensional heteronuclear experiments, dihedral angle restraints based on measurements of scalar coupling constants, and dipolar coupling restraints measured on samples in partially aligned phases.
     
  •   Software and Computing Hide
    NMR Software
    Authors BRUNGER
    Classification refinement
    Software Name X-PLOR 3.8, 4.0
    Authors GARRETT
    Classification structure solution
    Software Name PIPP 4.2.8
    Authors DELAGLIO
    Classification structure solution
    Software Name NMRPIPE 1.7
    Authors BRUKER
    Classification structure solution
    Software Name XWINNMR 2.5