X-RAY DIFFRACTION Experimental Data & Validation


X-ray Experimental Help

Crystallization

Crystalization Experiments
pH 6.5
Details pH 6.5

Crystal Data

Unit Cell
Length (Å) Angle (°)
a = 91.35 α = 90
b = 109.19 β = 122.81
c = 57.78 γ = 90
Symmetry
Space Group C 1 2 1

Diffraction

Diffraction Experiment
ID # Data Collection Temperature
1 100
Diffraction Detector
Detector Diffraction Type Details Collection Date
IMAGE PLATE RIGAKU RAXIS MIRRORS 1997-07
Diffraction Radiation
Monochromator Protocol
NI FILTER SINGLE WAVELENGTH
Diffraction Detector Source
Source Type Wavelength List Synchrotron Site Beamline
ROTATING ANODE RIGAKU RU200 -- -- --

Data Collection

Overall
Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot
2.8 30 99.9 0.091 -- -- 5.3 -- 11820 -- 0.0 46.4
High Resolution Shell
Resolution (High) Resolution (Low) Percent Possible (All) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All)
2.8 2.9 100.0 0.292 -- 5.9 6.6 --

Refinement

Statistics
Structure Solution Method Refinement High Resolution Refinement Low Resolution Cut-off Sigma (I) Cut-off Sigma (F) Number of Reflections (All) Number of Reflections (Observed) Number of Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work R-Free R-Free Selection Details
MOLECULAR REPLACEMENT 2.8 30.0 -- 0.0 -- 11759 559 99.0 -- 0.266 0.252 0.319 RANDOM
Temperature Factor Modeling
Temperature Factor Value
Mean Isotropic B 34.4
Anisotropic B[1][1] 0.466
Anisotropic B[1][2] 0.0
Anisotropic B[1][3] 8.675
Anisotropic B[2][2] -11.0
Anisotropic B[2][3] 0.0
Anisotropic B[3][3] 10.55
RMS Deviations
Key Refinement Restraint Deviation
p_transverse_tor 24.6
p_singtor_nbd 0.18
p_hb_or_metal_coord 0.05
p_chiral_restr 0.116
p_special_tor 0.0
p_mcangle_it 4.101
p_scangle_it 5.236
p_staggered_tor 21.4
p_mcbond_it 2.37
p_xyhbond_nbd 0.152
p_planar_d 0.03
p_plane_restr 0.0149
p_multtor_nbd 0.275
p_scbond_it 3.157
p_angle_d 0.027
p_bond_d 0.009
p_planar_tor 2.0
Number of Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms Numbers
Protein Atoms 3147
Nucleic Acid Atoms 0
Heterogen Atoms 0
Solvent Atoms 5

Software

Software
Software Name Purpose
DENZO data reduction
SCALEPACK data scaling
AMoRE phasing version: IN CCP4
REFMAC refinement
CCP4 phasing