X-RAY DIFFRACTION Experimental Data & Validation


X-ray Experimental Help

Crystallization

Crystalization Experiments
Method Vapor Diffusion Hanging Drop
pH 7.5
Details pH 7.5, VAPOR DIFFUSION, HANGING DROP

Crystal Data

Unit Cell
Length (Å) Angle (°)
a = 50.3 α = 109.3
b = 64.2 β = 108.3
c = 49.4 γ = 96.3
Symmetry
Space Group P 1

Diffraction

Diffraction Experiment
ID # Data Collection Temperature
1 293
Diffraction Detector
Detector Diffraction Type Details Collection Date
IMAGE PLATE RIGAKU MIRRORS 1997-08-15
Diffraction Radiation
Monochromator Protocol
MIRRORS SINGLE WAVELENGTH
Diffraction Detector Source
Source Type Wavelength List Synchrotron Site Beamline
ROTATING ANODE RIGAKU RU200 -- -- --

Data Collection

Overall
Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot
1.9 20 86.0 0.056 -- -- 2.3 -- 37374 -- 1.0 40.7

Refinement

Statistics
Structure Solution Method Refinement High Resolution Refinement Low Resolution Cut-off Sigma (I) Cut-off Sigma (F) Number of Reflections (All) Number of Reflections (Observed) Number of Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work R-Free R-Free Selection Details
OTHER 2.15 6.0 -- 1.0 -- 22040 -- 75.0 -- -- 0.2 0.288 RANDOM
Temperature Factor Modeling
Temperature Factor Value
Mean Isotropic B 26.5
RMS Deviations
Key Refinement Restraint Deviation
x_bond_d 0.011
x_angle_deg 1.94
Coordinate Error
Parameter Value
Luzzati ESD (Observed) 0.25
Number of Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms Numbers
Protein Atoms 3627
Nucleic Acid Atoms 444
Heterogen Atoms 0
Solvent Atoms 236

Software

Software
Software Name Purpose
X-PLOR model building
X-PLOR refinement version: 3.1
R-AXIS data reduction
R-AXIS data scaling
X-PLOR phasing