X-RAY DIFFRACTION Experimental Data & Validation


X-ray Experimental Help

Crystallization

Crystalization Experiments
pH 8.1
Details pH 8.1

Crystal Data

Unit Cell
Length (Å) Angle (°)
a = 79.18 α = 90
b = 84.32 β = 90
c = 107.04 γ = 90
Symmetry
Space Group C 2 2 21

Diffraction

Diffraction Experiment
ID # Data Collection Temperature
1 140
Diffraction Detector
Detector Diffraction Type Details Collection Date
AREA DETECTOR SIEMENS -- 1998-05
Diffraction Radiation
Monochromator Protocol
GRAPHITE(002) --
Diffraction Detector Source
Source Type Wavelength List Synchrotron Site Beamline
ROTATING ANODE ENRAF-NONIUS FR591 -- -- --

Data Collection

Overall
Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot
1.35 42.16 92.0 -- 0.083 -- 6.5 -- 72107 -- 2.0 10.2
High Resolution Shell
Resolution (High) Resolution (Low) Percent Possible (All) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All)
1.35 1.39 80.9 -- 0.17 4.1 2.7 --

Refinement

Statistics
Structure Solution Method Refinement High Resolution Refinement Low Resolution Cut-off Sigma (I) Cut-off Sigma (F) Number of Reflections (All) Number of Reflections (Observed) Number of Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work R-Free R-Free Selection Details
-- 1.35 9.0 -- 3.0 -- 66460 3369 84.8 -- 0.205 0.205 0.236 RANDOM
High Resolution Shell
Refinement method Shell Resolution (High) Shell Resolution (Low) # of Reflections (Observed) # of Reflections (R-Free) # of Reflections (R-Work) R-Factor (R-Work) R-Factor (R-Free) R-Factor (R-Free Error) Percent Reflections (Observed)
X Ray Diffraction 1.35 1.41 -- 304 5567 0.237 0.236 -- 60.4
Temperature Factor Modeling
Temperature Factor Value
Isotropic Thermal Model RESTRAINED
Mean Isotropic B 11.7
RMS Deviations
Key Refinement Restraint Deviation
x_scangle_it 3.073
x_scbond_it 2.149
x_mcangle_it 1.71
x_mcbond_it 1.135
x_improper_angle_d 0.95
x_bond_d 0.005
x_angle_deg 1.35
x_dihedral_angle_d 20.9
Coordinate Error
Parameter Value
Luzzati Sigma A (Observed) 0.14
Luzzati Resolution Cutoff (Low) 3.0
Number of Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms Numbers
Protein Atoms 3208
Nucleic Acid Atoms 0
Heterogen Atoms 2
Solvent Atoms 651

Software

Computing
Computing Package Purpose
SAINT Data Reduction (intensity integration)
SAINT Data Reduction (data scaling)
X-PLOR Structure Solution
X-PLOR 3.851 Structure Refinement
Software
Software Name Purpose
X-PLOR version: 3.851 refinement
X-PLOR model building