X-RAY DIFFRACTION Experimental Data & Validation


X-ray Experimental Help

Crystallization

Crystalization Experiments
pH 6.8
Details pH 6.8

Crystal Data

Unit Cell
Length (Å) Angle (°)
a = 225.2 α = 90
b = 69.4 β = 106.4
c = 104.6 γ = 90
Symmetry
Space Group C 1 2 1

Diffraction

Diffraction Experiment
ID # Data Collection Temperature
1 108
Diffraction Detector
Detector Diffraction Type Details Collection Date
CCD PRINCETON 2K WIGGLERS 1995-03
Diffraction Radiation
Monochromator Protocol
SI(111) --
Diffraction Detector Source
Source Type Wavelength List Synchrotron Site Beamline
SYNCHROTRON CHESS BEAMLINE F1 -- CHESS F1

Data Collection

Overall
Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot
3 25 99.1 -- 0.111 -- 3.7 -- 30368 -- 0.0 98.1
High Resolution Shell
Resolution (High) Resolution (Low) Percent Possible (All) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All)
3.0 3.05 99.5 -- 0.89 1.1 2.5 --

Refinement

Statistics
Structure Solution Method Refinement High Resolution Refinement Low Resolution Cut-off Sigma (I) Cut-off Sigma (F) Number of Reflections (All) Number of Reflections (Observed) Number of Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work R-Free R-Free Selection Details
MOLECULAR REPLACEMENT 3.1 10.0 -- 2.0 -- 22627 1802 99.1 -- 0.258 0.258 0.362 RANDOM
High Resolution Shell
Refinement method Shell Resolution (High) Shell Resolution (Low) # of Reflections (Observed) # of Reflections (R-Free) # of Reflections (R-Work) R-Factor (R-Work) R-Factor (R-Free) R-Factor (R-Free Error) Percent Reflections (Observed)
X Ray Diffraction 3.1 3.24 -- 100 1736 0.349 0.383 -- 85.7
Temperature Factor Modeling
Temperature Factor Value
Isotropic Thermal Model RESTRAINED
Mean Isotropic B 49.0
RMS Deviations
Key Refinement Restraint Deviation
x_scangle_it 2.68
x_scbond_it 1.64
x_mcangle_it 2.82
x_mcbond_it 1.57
x_improper_angle_d 1.59
x_bond_d 0.01
x_angle_deg 1.8
x_dihedral_angle_d 25.2
Coordinate Error
Parameter Value
Luzzati ESD (Observed) 0.51
Luzzati Sigma A (Observed) 0.61
Luzzati Resolution Cutoff (Low) 10.0
Luzzati ESD (R-Free Set) 0.71
Luzzati Sigma A (R-Free Set) 0.68
Number of Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms Numbers
Protein Atoms 7777
Nucleic Acid Atoms 0
Heterogen Atoms 22
Solvent Atoms 0

Software

Computing
Computing Package Purpose
DENZO Data Reduction (intensity integration)
CCP4 (SCALA) Data Reduction (data scaling)
X-PLOR 3.85 Structure Solution
X-PLOR 3.85 Structure Refinement
Software
Software Name Purpose
X-PLOR version: 3.85 refinement
X-PLOR version: 3.85 model building