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An Information Portal to 108957 Biological Macromolecular Structures

SOLUTION NMR
Materials and Methods page
1BJ6
  •   NMR Eperiment Details Hide
    Spectrometer Info
    Field Strength 600.0
    Manufacturer BRUKER
    Model AMX600
     
    Sample Conditions
    IDs solution ID:1 condition ID:1
    Sample Contents WATER
    Ionic Strength LOW SALT CONDITIONS
    pH 6.0
    Pressure 1
    Pressure Units ATM
    Temperature 303
     
     
  •   NMR Refinement Information Hide
    Refinement
    Method DYNAMICAL SIMULATED ANNEALING
    Details THE PROTEIN PART OF THE STRUCTURE WAS FIRST GENERATED USING A RESTRAINTED DYNAMICAL ANNEALING CALCULATION. THE D(ACGCC) NUCLEIC ACID UNDER A DNA CONFORMATION WAS DOCKED APPROXIMATIVELY TO THE PROTEIN BASED ON THE 28 INTERMOLECULAR NOES. THE DOCKED STRUCTURE WAS ENERGY-MINIMIZED UNDER NOES RESTRAINTS. THIS INITIAL COMPLEXED STRUCTURE WAS THEN USED FOR A SECOND SET OF SIMULATED ANNEALING CALCULATION.
     
  •   NMR Ensemble Information Hide
    Ensemble
    Conformer Selection Criteria LEAST RESTRAINT VIOLATION AND LOWEST TOTAL ENERGY
    Conformers Calculated Total Number 50
    Conformers Submitted Total Number 10
     
  •   NMR Experimental Information Hide
    Experiment
    IDs experiment ID:1 solution ID:1 conditons ID:1
    Type NOESY
    IDs experiment ID:2 solution ID:1 conditons ID:1
    Type TOCSY
    IDs experiment ID:3 solution ID:1 conditons ID:1
    Type DQF
     
  •   Software and Computing Hide
    NMR Software
    Classification structure solution
    Software Name BIOSYM/MSI
    Classification structure solution
    Software Name BRUKER DISNMR DISNMR
    Authors BIOSYM
    Classification refinement
    Software Name DISCOVER