X-RAY DIFFRACTION Experimental Data & Validation


X-ray Experimental Help

Crystallization

Crystalization Experiments
pH 5.5
Details CO-CRYSTALLIZED WITH URANIUM ACETATE, PH 5.5

Crystal Data

Unit Cell
Length (Å) Angle (°)
a = 109.72 α = 90
b = 75.72 β = 90
c = 70.31 γ = 90
Symmetry
Space Group P 21 21 21

Diffraction

Diffraction Experiment
ID # Data Collection Temperature
1 120
Diffraction Detector
Detector Diffraction Type Details Collection Date
IMAGE PLATE MARRESEARCH -- --
Diffraction Radiation
Monochromator Protocol
-- SINGLE WAVELENGTH
Diffraction Detector Source
Source Type Wavelength List Synchrotron Site Beamline
SYNCHROTRON EMBL/DESY, HAMBURG BEAMLINE X11 -- EMBL/DESY, HAMBURG X11

Data Collection

Overall
Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot
1.75 44.2 96.69 0.059 -- -- 3.3 -- 60799 -- 0.0 14.2
High Resolution Shell
Resolution (High) Resolution (Low) Percent Possible (All) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All)
1.75 1.78 99.2 0.203 -- 4.0 -- --

Refinement

Statistics
Structure Solution Method Refinement High Resolution Refinement Low Resolution Cut-off Sigma (I) Cut-off Sigma (F) Number of Reflections (All) Number of Reflections (Observed) Number of Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work R-Free R-Free Selection Details
OTHER 1.75 15.0 -- 0.0 -- 59647 2948 98.6 -- -- 0.1816 0.214 --
Temperature Factor Modeling
Temperature Factor Value
Mean Isotropic B 17.7
RMS Deviations
Key Refinement Restraint Deviation
p_transverse_tor 29.4
p_staggered_tor 14.3
p_planar_tor 3.5
p_xyhbond_nbd 0.127
p_multtor_nbd 0.248
p_bond_d 0.01
p_angle_d 0.027
p_planar_d 0.029
p_mcbond_it 1.187
p_mcangle_it 1.703
p_scbond_it 1.554
p_scangle_it 2.31
p_singtor_nbd 0.176
Number of Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms Numbers
Protein Atoms 4192
Nucleic Acid Atoms 0
Heterogen Atoms 36
Solvent Atoms 437

Software

Computing
Computing Package Purpose
DENZO Data Reduction (intensity integration)
SCALEPACK Data Reduction (data scaling)
CCP4 Structure Solution
REFMAC Structure Refinement
Software
Software Name Purpose
REFMAC refinement
CCP4 model building
SCALEPACK data reduction
DENZO data collection