X-RAY DIFFRACTION Experimental Data & Validation


X-ray Experimental Help

Crystallization

Crystalization Experiments
pH 7
Details CRYSTALLIZED BY BATCH METHODS FROM A SATURATED SOLUTION OF GRAMICIDIN D IN N-PROPANOL, PH 7.0, BATCH METHOD

Crystal Data

Unit Cell
Length (Å) Angle (°)
a = 32.43 α = 90
b = 32.46 β = 90
c = 24.15 γ = 90
Symmetry
Space Group P 21 21 21

Diffraction

Diffraction Experiment
ID # Data Collection Temperature
1 120
Diffraction Detector
Detector Diffraction Type Details Collection Date
IMAGE PLATE RIGAKU RAXIS II COLLIMATOR 1996-09
Diffraction Radiation
Monochromator Protocol
GRAPHITE(002) --
Diffraction Detector Source
Source Type Wavelength List Synchrotron Site Beamline
ROTATING ANODE RIGAKU RUH2R -- -- --

Data Collection

Overall
Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot
1.13 100 95.5 0.041 0.041 -- 7.0 -- 67561 -- -3.0 --
High Resolution Shell
Resolution (High) Resolution (Low) Percent Possible (All) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All)
1.13 1.16 82.4 0.065 0.065 13.7 2.3 --

Refinement

Statistics
Structure Solution Method Refinement High Resolution Refinement Low Resolution Cut-off Sigma (I) Cut-off Sigma (F) Number of Reflections (All) Number of Reflections (Observed) Number of Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work R-Free R-Free Selection Details
MOLECULAR PLACEMENT; DIFFERENCE MAPS 1.13 100.0 -- 0.0 9571 -- 563 95.5 0.087 0.085 -- 0.121 5% OF REFLECTIONS IN THIN RESOLUTION SHELLS.
RMS Deviations
Key Refinement Restraint Deviation
s_approx_iso_adps 0.029
s_similar_adp_cmpnt 0.028
s_rigid_bond_adp_cmpnt 0.005
s_non_zero_chiral_vol 0.105
s_zero_chiral_vol 0.166
s_from_restr_planes 0.411
s_angle_d 0.033
s_bond_d 0.016
Coordinate Error
Parameter Value
Number Disordered Residues 8.0
Occupancy Sum Hydrogen 369.47
Occupancy Sum Non Hydrogen 316.72
Number of Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms Numbers
Protein Atoms 292
Nucleic Acid Atoms 0
Heterogen Atoms 40
Solvent Atoms 0

Software

Computing
Computing Package Purpose
DENZO Data Reduction (intensity integration)
SCALEPACK Data Reduction (data scaling)
SHELXL-97 Structure Solution
SHELXL-97 Structure Refinement
Software
Software Name Purpose
SHELXL-97 refinement
SHELXL-97 model building