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149174
Biological Macromolecular Structures Enabling Breakthroughs in Research and Education
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Structure Summary
3D View
Annotations
Sequence
Sequence Similarity
Structure Similarity
Experiment
4GXJ
R283K DNA polymerase beta ternary complex with a templating 8OG and incoming dCTP analog
Display Files
FASTA Sequence
PDB File
PDB File (Header)
mmCIF File
mmCIF File (Header)
PDBML/XML File
PDBML/XML File (Header)
Download Files
FASTA Sequence
PDB File (Text)
PDB File (gz)
PDBx/mmCIF File
PDBx/mmCIF File (gz)
PDBML/XML File
PDBML/XML File (gz)
Structure Factor (Text)
Structure Factor (gz)
Biological Assembly (gz) (A+S)
Macromolecule Annotations for the Entities in PDB 4GXJ
Domain Annotation: CATH
CATH Database (version 4.0.0) Homepage
Chains
Domain
Class
Architecture
Topology
Homology
A1
4gxjA01
Mainly Alpha
Orthogonal Bundle
DNA polymerase; domain 1
DNA polymerase beta, N-terminal domain-like
A2
4gxjA02
Mainly Alpha
Orthogonal Bundle
DNA polymerase; domain 1
5' to 3' exonuclease, C-terminal subdomain
A3
4gxjA03
Alpha Beta
2-Layer Sandwich
Beta Polymerase; domain 2
Beta Polymerase, domain 2
A4
4gxjA04
Alpha Beta
2-Layer Sandwich
Beta Polymerase; domain 3
Beta Polymerase, domain 3
Protein Family Annotation
Pfam Database Homepage
Chains
Pfam Accession
Pfam Identifier
Pfam Description
Type
Source
Gene Product Annotation
Gene Ontology Consortium Homepage
Chains
Polymer
Molecular Function
Biological Process
Cellular Component
A
DNA polymerase beta (4GXJ:A)
DNA Binding
Damaged DNA Binding
DNA Directed DNA Polymerase Activity
DNA-(apurinic or apyrimidinic site) endonuclease activity
Protein Binding
Microtubule Binding
Transferase Activity
Nucleotidyltransferase Activity
Lyase Activity
Enzyme Binding
DNA Polymerase Activity
Metal Ion Binding
DNA Replication
DNA Dependent DNA Replication
DNA Repair
Base Excision Repair
Base Excision Repair Base Free Sugar Phosphate Removal
Base Excision Repair Gap Filling
Base Excision Repair DNA Ligation
Pyrimidine Dimer Repair
Nucleotide Excision Repair DNA Gap Filling
Double Strand Break Repair Via Nonhomologous End Joining
Apoptotic Process
Inflammatory Response
Cellular Response to DNA Damage Stimulus
Salivary Gland Morphogenesis
Aging
Intrinsic Apoptotic Signaling Pathway in Response to DNA Damage
Response to Gamma Radiation
Somatic Diversification of Immunoglobulins
Somatic Hypermutation of Immunoglobulin Genes
Protein Deubiquitination
Response to Ethanol
Lymph Node Development
Spleen Development
Homeostasis of Number of Cells
Neuron Apoptotic Process
Response to Hyperoxia
Immunoglobulin Heavy Chain V D J Recombination
DNA Biosynthetic Process
Nucleus
Nucleoplasm
Cytoplasm
Microtubule
Spindle Microtubule
Protein Containing Complex
D
DNA (5'-D(P*GP*TP*CP*GP*G)-3') (4GXJ:D)
none
none
none
P
DNA (5'-D(*GP*CP*TP*GP*AP*TP*GP*CP*GP*A)- 3') (4GXJ:P)
none
none
none
T
DNA (5'-D(*CP*CP*GP*AP*CP*(8OG)P*TP*CP*GP*CP*AP*TP*CP*AP*GP*C)- 3') (4GXJ:T)
none
none
none
Protein Modification Annotation
Type
PDB Residue Nr.
Description