Macromolecule Annotations for the Entities in PDB 1VQL

Domain Annotation: SCOP Classification SCOP Database (version: 1.75) Homepage

Chains Domain Info Class Fold Superfamily Family Domain Species
11-56 d1vql11 Small proteins Rubredoxin-like Zn-binding ribosomal proteins Ribosomal protein L37e Ribosomal protein L37e Archaeon Haloarcula marismortui [TaxId: 2238]
31-92 d1vql31 Small proteins Rubredoxin-like Zn-binding ribosomal proteins Ribosomal protein L44e Ribosomal protein L44e Archaeon Haloarcula marismortui [TaxId: 2238]
A91-237 d1vqla1 All beta proteins SH3-like barrel Translation proteins SH3-like domain C-terminal domain of ribosomal protein L2 C-terminal domain of ribosomal protein L2 Archaeon Haloarcula marismortui [TaxId: 2238]
A1-90 d1vqla2 All beta proteins OB-fold Nucleic acid-binding proteins Cold shock DNA-binding domain-like N-terminal domain of ribosomal protein L2 Archaeon Haloarcula marismortui [TaxId: 2238]
B1-337 d1vqlb1 All beta proteins Reductase/isomerase/elongation factor common domain Translation proteins Ribosomal protein L3 Ribosomal protein L3 Archaeon Haloarcula marismortui [TaxId: 2238]
C1-246 d1vqlc1 Alpha and beta proteins (a/b) Ribosomal protein L4 Ribosomal protein L4 Ribosomal protein L4 Ribosomal protein L4 Archaeon Haloarcula marismortui [TaxId: 2238]
D10-174 d1vqld1 Alpha and beta proteins (a+b) RL5-like RL5-like Ribosomal protein L5 Ribosomal protein L5 Archaeon Haloarcula marismortui [TaxId: 2238]
E1-79 d1vqle1 Alpha and beta proteins (a+b) Ribosomal protein L6 Ribosomal protein L6 Ribosomal protein L6 Ribosomal protein L6 Archaeon Haloarcula marismortui [TaxId: 2238]
E80-172 d1vqle2 Alpha and beta proteins (a+b) Ribosomal protein L6 Ribosomal protein L6 Ribosomal protein L6 Ribosomal protein L6 Archaeon Haloarcula marismortui [TaxId: 2238]
F1-119 d1vqlf1 Alpha and beta proteins (a+b) Bacillus chorismate mutase-like L30e-like L30e/L7ae ribosomal proteins Ribosomal protein L7ae Archaeon Haloarcula marismortui [TaxId: 2238]
H1-163 d1vqlh1 Alpha and beta proteins (a+b) alpha/beta-Hammerhead Ribosomal protein L16p/L10e Ribosomal protein L10e Ribosomal protein L10e Archaeon Haloarcula marismortui [TaxId: 2238]
I71-140 d1vqli1 All alpha proteins DNA/RNA-binding 3-helical bundle Ribosomal protein L11, C-terminal domain Ribosomal protein L11, C-terminal domain Ribosomal protein L11, C-terminal domain Archaeon Haloarcula marismortui [TaxId: 2238]
J4-145 d1vqlj1 Alpha and beta proteins (a/b) Ribosomal protein L13 Ribosomal protein L13 Ribosomal protein L13 Ribosomal protein L13 Archaeon Haloarcula marismortui [TaxId: 2238]
K1-132 d1vqlk1 All beta proteins Ribosomal protein L14 Ribosomal protein L14 Ribosomal protein L14 Ribosomal protein L14 Archaeon Haloarcula marismortui [TaxId: 2238]
L1-150 d1vqll1 Alpha and beta proteins (a/b) Ribosomal proteins L15p and L18e Ribosomal proteins L15p and L18e Ribosomal proteins L15p and L18e Ribosomal protein L15 (L15p) Archaeon Haloarcula marismortui [TaxId: 2238]
M1-194 d1vqlm1 Alpha and beta proteins (a+b) Ribosomal proteins S24e, L23 and L15e Ribosomal proteins S24e, L23 and L15e L15e Ribosomal protein L15e Archaeon Haloarcula marismortui [TaxId: 2238]
N1-186 d1vqln1 Alpha and beta proteins (a/b) Ribonuclease H-like motif Translational machinery components Ribosomal protein L18 and S11 Ribosomal protein L18 (L18p) Archaeon Haloarcula marismortui [TaxId: 2238]
O1-115 d1vqlo1 Alpha and beta proteins (a/b) Ribosomal proteins L15p and L18e Ribosomal proteins L15p and L18e Ribosomal proteins L15p and L18e Ribosomal protein L18e Archaeon Haloarcula marismortui [TaxId: 2238]
P1-143 d1vqlp1 All alpha proteins Ribosomal protein L19 (L19e) Ribosomal protein L19 (L19e) Ribosomal protein L19 (L19e) Ribosomal protein L19 (L19e) Archaeon Haloarcula marismortui [TaxId: 2238]
Q1-95 d1vqlq1 All beta proteins SH3-like barrel Translation proteins SH3-like domain Ribosomal proteins L24p and L21e Ribosomal proteins L21e Archaeon Haloarcula marismortui [TaxId: 2238]
R1-150 d1vqlr1 Alpha and beta proteins (a+b) Ribosomal protein L22 Ribosomal protein L22 Ribosomal protein L22 Ribosomal protein L22 Archaeon Haloarcula marismortui [TaxId: 2238]
S1-81 d1vqls1 Alpha and beta proteins (a+b) Ribosomal proteins S24e, L23 and L15e Ribosomal proteins S24e, L23 and L15e L23p Ribosomal protein L23 Archaeon Haloarcula marismortui [TaxId: 2238]
T1-119 d1vqlt1 All beta proteins SH3-like barrel Translation proteins SH3-like domain Ribosomal proteins L24p and L21e Ribosomal proteins L24 (L24p) Archaeon Haloarcula marismortui [TaxId: 2238]
U4-56 d1vqlu1 Small proteins Glucocorticoid receptor-like (DNA-binding domain) Glucocorticoid receptor-like (DNA-binding domain) Ribosomal protein L24e Ribosomal protein L24e Archaeon Haloarcula marismortui [TaxId: 2238]
V1-65 d1vqlv1 All alpha proteins Long alpha-hairpin Ribosomal protein L29 (L29p) Ribosomal protein L29 (L29p) Ribosomal protein L29 (L29p) Archaeon Haloarcula marismortui [TaxId: 2238]
W1-154 d1vqlw1 Alpha and beta proteins (a+b) Ribosomal protein L30p/L7e Ribosomal protein L30p/L7e Ribosomal protein L30p/L7e Archaeal L30 (L30a) Archaeon Haloarcula marismortui [TaxId: 2238]
X7-88 d1vqlx1 Alpha and beta proteins (a+b) Ribosomal protein L31e Ribosomal protein L31e Ribosomal protein L31e Ribosomal protein L31e Archaeon Haloarcula marismortui [TaxId: 2238]
Y95-236 d1vqly1 Alpha and beta proteins (a/b) Barstar-like Ribosomal protein L32e Ribosomal protein L32e Ribosomal protein L32e Archaeon Haloarcula marismortui [TaxId: 2238]
Z10-82 d1vqlz1 Small proteins Rubredoxin-like Zn-binding ribosomal proteins Ribosomal protein L37ae Ribosomal protein L37ae Archaeon Haloarcula marismortui [TaxId: 2238]
21-49 d1vql21 All alpha proteins Non-globular all-alpha subunits of globular proteins Ribosomal protein L39e Ribosomal protein L39e Ribosomal protein L39e Archaeon Haloarcula marismortui [TaxId: 2238]
G12-73 d1vqlg1 Peptides Ribosomal protein L10 Ribosomal protein L10 Ribosomal protein L10 Ribosomal protein L10 Archaeon Haloarcula marismortui [TaxId: 2238]

Domain Annotation: CATH CATH Database (version 4.0.0) Homepage

Chains Domain Class Architecture Topology Homology
1 1vql100 Mainly Beta Single Sheet N-terminal domain of TfIIb
2 1vql200 Mainly Alpha Orthogonal Bundle Atp Synthase Epsilon Chain; Chain: I; Ribosomal protein L39e
3 1vql300 Alpha Beta Roll Nuclear Transport Factor 2; Chain: A,
A1 1vqlA01 Mainly Beta Beta Barrel OB fold (Dihydrolipoamide Acetyltransferase, E2P) Nucleic acid-binding proteins
A2 1vqlA02 Mainly Beta Roll SH3 type barrels.
A3 1vqlA03 Few Secondary Structures Irregular Ribosomal protein L2; domain 3 Ribosomal protein L2, domain 3
B1 1vqlB01 Few Secondary Structures Irregular Ribosomal protein L3; domain 3 Ribosomal protein L3, domain 3
B2 1vqlB02 Mainly Beta Beta Barrel Elongation Factor Tu (Ef-tu); domain 3 Translation factors
B3 1vqlB03 Alpha Beta 2-Layer Sandwich Ribosomal Protein L3; Chain: B; domain 2,
C 1vqlC00 Alpha Beta 3-Layer(aba) Sandwich Ribosomal Protein L4; Chain: A;
D 1vqlD00 Alpha Beta 2-Layer Sandwich 50s Ribosomal Protein L5; Chain: A,
E1 1vqlE01 Alpha Beta Alpha-Beta Complex Outer Surface Protein A; domain 3
E2 1vqlE02 Alpha Beta Alpha-Beta Complex Outer Surface Protein A; domain 3
F 1vqlF00 Alpha Beta 2-Layer Sandwich 60s Ribosomal Protein L30; Chain: A;
H 1vqlH00 Alpha Beta Alpha-Beta Complex Aldehyde Oxidoreductase; domain 3
I 1vqlI00 Mainly Alpha Orthogonal Bundle Arc Repressor Mutant, subunit A
J 1vqlJ00 Alpha Beta Alpha-Beta Complex Ribosomal Protein L13p; Chain: A;
K 1vqlK00 Mainly Beta Beta Barrel Ribosomal Protein L14 Ribosomal Protein L14;
L1 1vqlL01 Few Secondary Structures Irregular Molecule: Ribosomal Protein L15; Chain: K; domain 1
L2 1vqlL02 Alpha Beta Ribosomal Protein L15; Chain: K; domain 2 Ribosomal Protein L15; Chain: K; domain 2
M 1vqlM00 Alpha Beta 3-Layer(aba) Sandwich Ribosomal protein L15e Ribosomal protein l15e
N 1vqlN00 Alpha Beta 2-Layer Sandwich Nucleotidyltransferase; domain 5
O 1vqlO00 Alpha Beta Ribosomal Protein L15; Chain: K; domain 2 Ribosomal Protein L15; Chain: K; domain 2
P1 1vqlP01 Mainly Alpha Orthogonal Bundle 50s Ribosomal Protein L19e, Chain O, domain 1
P2 1vqlP02 Mainly Alpha Up-down Bundle Single alpha-helices involved in coiled-coils or other helix- helix interfaces Single Heli x bin
P3 1vqlP03 Mainly Alpha Orthogonal Bundle Non-ribosomal Peptide Synthetase Peptidyl Carrier Protein; Chain A
Q 1vqlQ00 Mainly Beta Roll SH3 type barrels. Myosin S1 fragment SH3-like barrel
R 1vqlR00 Alpha Beta Alpha-Beta Complex Ribosomal Protein L22; Chain A Ribosomal Protein L22; Chain A
S 1vqlS00 Alpha Beta 2-Layer Sandwich Alpha-Beta Plaits
T 1vqlT00 Mainly Beta Roll SH3 type barrels.
U 1vqlU00 Mainly Beta Roll Ribosomal Protein L24e; Chain: T;
V 1vqlV00 Mainly Alpha Orthogonal Bundle Helix Hairpins
W1 1vqlW01 Alpha Beta 2-Layer Sandwich Ribosomal Protein L30; Chain: A,
W2 1vqlW02 Mainly Alpha Orthogonal Bundle 3-methyladenine DNA Glycosylase II; Chain A, domain 3
X 1vqlX00 Alpha Beta Roll Ribosomal Protein L31e; Chain: W;
Z 1vqlZ00 Mainly Beta Single Sheet N-terminal domain of TfIIb

Protein Family Annotation Pfam Database Homepage

Chains Pfam Accession Pfam Identifier Pfam Description Type Source

Gene Product Annotation Gene Ontology Consortium Homepage

Chains Polymer Molecular Function Biological Process Cellular Component
0 23S ribosomal rna (1VQL:0)
  • none
  • none
  • none
9 5S ribosomal RNA (1VQL:9)
  • none
  • none
  • none
4 5'-R(*CP*CP*(PPU)*(TSE)*(DA)*CP*C)-3' (1VQL:4)
  • none
  • none
  • none
A 50S ribosomal protein L2P (1VQL:A)
B 50S ribosomal protein L3P (1VQL:B)
C 50S ribosomal protein L4E (1VQL:C)
D 50S ribosomal protein L5P (1VQL:D)
E 50S ribosomal protein L6P (1VQL:E)
F 50S ribosomal protein L7AE (1VQL:F)
G ACIDIC RIBOSOMAL PROTEIN P0 HOMOLOG (1VQL:G)
H 50S RIBOSOMAL PROTEIN L10E (1VQL:H)
J 50S ribosomal protein L13P (1VQL:J)
K 50S ribosomal protein L14P (1VQL:K)
L 50S ribosomal protein L15P (1VQL:L)
  • none
M 50S Ribosomal Protein L15E (1VQL:M)
N 50S ribosomal protein L18P (1VQL:N)
O 50S ribosomal protein L18e (1VQL:O)
P 50S ribosomal protein L19E (1VQL:P)
Q 50S ribosomal protein L21e (1VQL:Q)
R 50S ribosomal protein L22P (1VQL:R)
S 50S ribosomal protein L23P (1VQL:S)
T 50S ribosomal protein L24P (1VQL:T)
U 50S ribosomal protein L24E (1VQL:U)
  • none
V 50S ribosomal protein L29P (1VQL:V)
W 50S ribosomal protein L30P (1VQL:W)
X 50S ribosomal protein L31e (1VQL:X)
Y 50S ribosomal protein L32E (1VQL:Y)
Z 50S ribosomal protein L37Ae (1VQL:Z)
1 50S ribosomal protein L37e (1VQL:1)
2 50S ribosomal protein L39e (1VQL:2)
3 50S ribosomal protein L44E (1VQL:3)
I 50S RIBOSOMAL PROTEIN L11P (1VQL:I)

Protein Modification Annotation

Type PDB Residue Nr. Description