Macromolecule Annotations for the Entities in PDB 1K5D

Domain Annotation: SCOP Classification SCOP Database (version: 1.75) Homepage

Chains Domain Info Class Fold Superfamily Family Domain Species
A d1k5da_ Alpha and beta proteins (a/b) P-loop containing nucleoside triphosphate hydrolases P-loop containing nucleoside triphosphate hydrolases G proteins Ran Human (Homo sapiens) [TaxId: 9606]
B d1k5db_ All beta proteins PH domain-like barrel PH domain-like Ran-binding domain Ran-binding protein 1, Ranbp1 Human (Homo sapiens) [TaxId: 9606]
C d1k5dc_ Alpha and beta proteins (a/b) Leucine-rich repeat, LRR (right-handed beta- alpha superhelix) RNI-like Rna1p (RanGAP1), N-terminal domain Rna1p (RanGAP1), N-terminal domain Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
D d1k5dd_ Alpha and beta proteins (a/b) P-loop containing nucleoside triphosphate hydrolases P-loop containing nucleoside triphosphate hydrolases G proteins Ran Human (Homo sapiens) [TaxId: 9606]
E d1k5de_ All beta proteins PH domain-like barrel PH domain-like Ran-binding domain Ran-binding protein 1, Ranbp1 Human (Homo sapiens) [TaxId: 9606]
F d1k5df_ Alpha and beta proteins (a/b) Leucine-rich repeat, LRR (right-handed beta- alpha superhelix) RNI-like Rna1p (RanGAP1), N-terminal domain Rna1p (RanGAP1), N-terminal domain Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
G d1k5dg_ Alpha and beta proteins (a/b) P-loop containing nucleoside triphosphate hydrolases P-loop containing nucleoside triphosphate hydrolases G proteins Ran Human (Homo sapiens) [TaxId: 9606]
H d1k5dh_ All beta proteins PH domain-like barrel PH domain-like Ran-binding domain Ran-binding protein 1, Ranbp1 Human (Homo sapiens) [TaxId: 9606]
I d1k5di_ Alpha and beta proteins (a/b) Leucine-rich repeat, LRR (right-handed beta- alpha superhelix) RNI-like Rna1p (RanGAP1), N-terminal domain Rna1p (RanGAP1), N-terminal domain Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
J d1k5dj_ Alpha and beta proteins (a/b) P-loop containing nucleoside triphosphate hydrolases P-loop containing nucleoside triphosphate hydrolases G proteins Ran Human (Homo sapiens) [TaxId: 9606]
K d1k5dk_ All beta proteins PH domain-like barrel PH domain-like Ran-binding domain Ran-binding protein 1, Ranbp1 Human (Homo sapiens) [TaxId: 9606]
L d1k5dl_ Alpha and beta proteins (a/b) Leucine-rich repeat, LRR (right-handed beta- alpha superhelix) RNI-like Rna1p (RanGAP1), N-terminal domain Rna1p (RanGAP1), N-terminal domain Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Domain Annotation: CATH CATH Database (version 4.0.0) Homepage

Protein Family Annotation Pfam Database Homepage

Chains Pfam Accession Pfam Identifier Pfam Description Type Source
B PF00638 Ran_BP1 RanBP1 domain Family
A PF00071 Ras Ras family Domain Includes sub-families Ras, Rab, Rac, Ral, Ran, Rap Ypt1 and more. Shares P-loop motif with GTP_EFTU, arf and myosin_head. See Pfam:PF00009 Pfam:PF00025, Pfam:PF00063. As regards Rab GTPases, these are important regulators of vesicle formation, motility and fusion. They share a fold in common with all Ras GTPases: this is a six-stranded beta-sheet surrounded by five alpha-helices [1]. PFAM PF00071

Gene Product Annotation Gene Ontology Consortium Homepage

Chains Polymer Molecular Function Biological Process Cellular Component
A,D,G,J GTP-binding nuclear protein RAN (1K5D:A,D,G,J)
B,E,H,K Ran-specific GTPase-activating protein (1K5D:B,E,H,K)
C,F,I,L Ran GTPase activating protein 1 (1K5D:C,F,I,L)

Protein Modification Annotation

Type PDB Residue Nr. Description