Citations in PubMed

Primary Citation PubMed: 9783745 Citations in PubMed

PDB ID Mentions in PubMed Central Article count: 2

Citations in PubMed

This linkout lists citations, indexed by PubMed, to the Primary Citation for this PDB ID.

PDB ID Mentions in PubMed Central

Data mentions are occurrences of PDB IDs in the full text articles from the PubMedCentral Open Access Subset of currently about 1 million articles. For each article, the sentences containing the PDB ID are listed. Article titles can be filtered by keywords and sorted by year.

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A protein-DNA docking benchmark.

(2008) Nucleic Acids Res 36

PubMed: 18583363 | PubMedCentral: PMC2504314 | DOI: 10.1093/nar/gkn386

The benchmark also contains several structures with special features such as strand breaks (PDB entries 1g9z, 1o3t and 3bam) and flipped out bases in the DNA (PDB entries 1diz, 1emh, 1vas and 7mht).

Publication Year: 2008

Pushing the limits of what is achievable in protein-DNA docking: benchmarking HADDOCK's performance.

(2010) Nucleic Acids Res 38

PubMed: 20466807 | PubMedCentral: PMC2943626 | DOI: 10.1093/nar/gkq222

These, for instance, involve enzymes that perform their catalytic function on single nucleotides that are flipped out of the helix into a catalytic pocket of the protein (1emh, 7mht), restriction enzy... es clamping themselves around the DNA (3bam,1rva) or proteins with complex dimerization interfaces (1tro, 1f4k).

Publication Year: 2010