Primary Citation PubMed: 4856347
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Calculation of accurate small angle X-ray scattering curves from coarse-grained protein models.
(2010) BMC Bioinformatics 11
PubMed: 20718956 | PubMedCentral: PMC2931518 | DOI: 10.1186/1471-2105-11-429
The absolute running time for a single scattering evaluation is approximately 30 ms for a 129 residues protein ([ 6LYZ ]), using the two-body model and a standard desktop computer (AMD Athlon X2 5200+... .
Publication Year: 2010
Insights into the mechanism of X-ray-induced disulfide-bond cleavage in lysozyme crystals based on EPR, optical absorption and X-ray diffraction studies.
(2013) Acta Crystallogr D Biol Crystallogr 69
PubMed: 24311579 | PubMedCentral: PMC3852651 | DOI: 10.1107/S0907444913022117
An initial model was obtained by molecular replacement using MOLREP (Vagin & Teplyakov, 2010 ▶ ) with the structure of lysozyme (PDB entry 6lyz ; Diamond, 1974 ▶ ) as the searc... target.
Publication Year: 2013
MARTINI bead form factors for the analysis of time-resolved X-ray scattering of proteins.
(2014) J Appl Crystallogr 47
PubMed: 25242909 | PubMedCentral: PMC4119947 | DOI: 10.1107/S1600576714009959
Fig. 6 ▶ shows the effect of coarse-graining on X-ray scattering calculations for a hen egg-white lysozyme [PDB code 6lyz (Diamond, 1974 ▶ ); Fig. 6 ▶ ( a )] and human carbon... 000ad;monoxy hemoglobin [PDB code 2hhb , Fig. 6 ▶ ( a )].
All calculations were performed without the displaced-solvent model for hen egg-white lysozyme (PDB code 6lyz ).
Figure 6 ( a ) Determination of q threshold (see text for details) for reliable coarse-grained calculation of protein X-ray scattering for hen egg-white lysozyme (PDB code 6lyz ) and carbonmonoxy hemoglobin (PDB code 2hhb ).
Publication Year: 2014
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